Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2087 210 3e-49 seq1371 203 4e-47 >seq2087 Length=2955978 Score = 210 bits (232), Expect = 3e-49 Identities = 519/780 (67%), Gaps = 17/780 (2%) Strand=Plus/Plus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||| ||||||||||| || ||||| |||||| ||||| ||||| || | || Sbjct 718833 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 718892 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || || || |||| |||||| ||||| || || || || | | ||| Sbjct 718893 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 718952 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGC---AATAAA-TGTTTAAACATTAAGCAGG 39620 | || ||| ||||| | | | | ||| ||| ||| | || | Sbjct 718953 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGT----ACAACAGACAAG 719008 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | ||||||||||| || || || |||| || | ||||| || || || | || | Sbjct 719009 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 719068 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATG 39739 ||||||| ||||||||||| ||||| || |||| ||||||| | || || ||||| || Sbjct 719069 GCATTAGCCCACGCTTTTTAAGCCAGAAGATGG-AGCAAAAACTCCCGGAGAAGAAAATC 719127 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCAC 39799 ||||| || ||||| |||| | ||||| | | | | || || ||||| Sbjct 719128 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGATTCAGCACCATCAATCCAA 719187 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | ||||||||||| |||||||| |||||||| || ||||| || ||| ||| ||| Sbjct 719188 CGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGA 719247 Query 39860 TAATGTTTTTCA--TCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 | | |||| | | | |||||| | ||| || |||| | ||| |||||||| | Sbjct 719248 T--GGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAG 719305 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 | || ||||||||||| || || || || || || ||| | ||||||| || || | Sbjct 719306 AGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGGA 719365 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 ||||| |||||| | || | ||| || ||||| || ||| ||||| || | Sbjct 719366 CCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGA 719425 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTATTCCAGTCAT 40094 | || | | || | || |||| | ||| |||| || || | | ||||| | Sbjct 719426 AGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCAGTGAC 719485 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 | ||||| || | ||| |||||||| || ||||| || || || || || ||||||| Sbjct 719486 GAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGT 719545 Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTG 40214 |||| | ||| || | | |||| ||||| || ||| ||||||| ||| |||| || Sbjct 719546 ACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCTG 719605 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||||| ||||| | ||| | || | |||||| || | ||| || Sbjct 1896913 TCCTCCTTGGTCAACATATCTTGCAGTATCATTGAACACCCGCAGCATAGGGACAATGCC 1896972 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||| || || ||||||||||| | || ||||| || | ||| Sbjct 1896973 ATTTGATGTCCCATTAGTACCGCGTATATAACTTCCAGTGGCACGAATGTTGTGCACAGA 1897032 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || || || | |||||| |||| || ||||| || Sbjct 1897033 AACACCAATACCTCCAGCAGACTTGCTAATAACAGCACACTCCTTCAGAGTATCATAAAT 1897092 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||| ||| ||||||| | ||| || |||||| Sbjct 1897093 TCCTTCAATGCTATCGTCTTTCATGTTGATAAGGAAGCAGCTA 1897135 >seq1371 Length=8752182 Score = 203 bits (224), Expect = 4e-47 Identities = 592/902 (66%), Gaps = 21/902 (2%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || || ||||| | ||||| || |||||||| || |||| | || || Sbjct 1699892 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 1699951 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTA--TAtttttttttAAATCCTAATTCTGAA 39442 ||||| |||| ||||| || || | | || |||| | | || | | | | Sbjct 1699952 CTCCATCCAATCGAACGGGTTC--TGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCC 1700009 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | || |||||||||||||| || ||||| |||||| ||||| ||||| || | Sbjct 1700010 AACAGCCTATCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACC 1700069 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 || || || || || || || |||| |||||| ||||| || || || || | | | Sbjct 1700070 AGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTAACT 1700129 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGC---AATAAA-TGTTTAAACATTAAGCA 39618 ||| || |||| ||||| | | | | ||| ||| || | ||| Sbjct 1700130 ATCCCCTGCACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGCTGTATAGC----AGGCA 1700185 Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||| || ||||| || || || || |||| || | ||||| || || || | ||| Sbjct 1700186 GGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAATCC 1700245 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGA 39737 ||||| | ||||||||||||||||| || |||| |||| ||| |||||| ||||| | Sbjct 1700246 TGGCATCAACCCACGCTTTTTGAGCCAGAAGATGG-AGCAGAAACTTCCAGAGAAGAAAA 1700304 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCC 39797 | ||||| || ||||| |||| | ||||| | | | | || || |||| Sbjct 1700305 TCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGATTCAGCACCATCAATCC 1700364 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | | ||||||||||| |||||||| |||||||| || ||||| || ||| ||| | Sbjct 1700365 AACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAA 1700424 Query 39858 GATAATGTTTTTCA--TCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 ||| | |||| | | | |||||| | || || |||| | ||| |||||||| Sbjct 1700425 GAT--GGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTC 1700482 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 || || ||||||||||| || || || || || || ||| | ||||||| || || Sbjct 1700483 AGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTG 1700542 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 ||||| |||||| | || | ||| || || || || || ||||| || Sbjct 1700543 AACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAA 1700602 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTATTCCAGTC 40092 || || | | || | || |||| | ||| |||| || || | | ||||| Sbjct 1700603 GAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTG 1700662 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 | | ||||| || | ||| |||||||| || ||||| || || || || || ||||| Sbjct 1700663 ACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTT 1700722 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTT 40212 |||||| | ||| || | | |||| ||||| || ||| ||||||| ||| |||| Sbjct 1700723 GTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTC 1700782 Query 40213 TG 40214 || Sbjct 1700783 TG 1700784 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 |||||||| || | |||| ||||| | |||| | || | |||||| || | ||| ||| Sbjct 2960554 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 2960613 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| || ||| ||||||||||| | || || || || | ||| Sbjct 2960614 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 2960673 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || || ||||| || ||| ||| | |||||| |||| || |||||||| Sbjct 2960674 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 2960733 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| ||||||| | ||| || |||||| Sbjct 2960734 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 2960775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686878867949040