Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1371 143 2e-29 >seq1371 Length=8752182 Score = 143 bits (158), Expect = 2e-29 Identities = 409/616 (66%), Gaps = 11/616 (2%) Strand=Plus/Minus Query 43679 CTTACAGAAAATCCGTCTAGGTT-TGTCGTGTTTCCAATTCAATATCATGACATATGGCA 43737 || |||||||| || ||| || ||| |||| |||||| |||| | | || ||| | Sbjct 1700788 CTCACAGAAAACCCAGATAGATTCTGTA-TGTTCCCAATTGAATACCCACAAATCTGGGA 1700730 Query 43738 AATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGA 43797 ||||||||||||||| | || ||||| ||||| || |||||||| ||| | | |||| Sbjct 1700729 AATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCTTTCGCAAGA 1700670 Query 43798 C-TTAG-CACATTGGATTGCATTAAAACCAC--AAGAAAAACATTTTATATCTTTGGTTT 43853 || | ||| | ||| ||| |||||| | ||| | ||||| || | | Sbjct 1700669 TGTTCGTCAC-TGGGAAACCATCTTAACCACCGACGAACAGCATTTCATCACCCACATCC 1700611 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || || || || ||||| || || || ||| | | | | || | Sbjct 1700610 TCGCCTTCTTCGCCGCATCAGACGGCATCGTTCTCGAGAATCTCGCCGGAAGATTCATGA 1700551 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | || ||||| | | ||||| || ||| ||||| || ||||| ||||| ||||| | Sbjct 1700550 AGGAGGTTCAGGTTGCTGAAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACA 1700491 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 |||| || ||||||||| |||||| |||| || |||||||||||| || || Sbjct 1700490 TTCACTCTGAAATGTACTCTCTTCTTTTAGAAACTTACATCAAAGATTCTAACCTTAA-A 1700432 Query 44034 ATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 | | || | ||| ||| || ||||| | ||| |||| | || || || ||||| Sbjct 1700431 ACCCATCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCT 1700372 Query 44093 CTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 ||| ||||| || ||| || |||| || | | | || ||||| ||| Sbjct 1700371 CTTCGTTGGATTGATGGTGCTGAATCGTTTGCTGAGAGGTTAATTGCTTTTGCTTGTGTT 1700312 Query 44153 GAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 ||||| |||||||| || ||| || ||| |||| || ||| | || || || || || Sbjct 1700311 GAAGGGATTTTCTTCTCTGGAAGTTTCTGC-TCCATCTTCTGGCTCAAAAAGCGTGGGTT 1700253 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 |||||| || || || || || || ||| | ||| || || ||||| | || || || Sbjct 1700252 GATGCCAGGATTAACCTTCTCGAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGA 1700193 Query 44272 TTTTGCTTGCTTGTTA 44287 |||||| ||| || || Sbjct 1700192 TTTTGCCTGCCTGCTA 1700177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397439113833430