Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2390 125 6e-24 seq2164 125 6e-24 seq896 125 6e-24 seq2618 120 3e-22 seq1009 113 4e-20 seq993 107 2e-18 seq863 95.1 1e-14 seq3251 93.3 4e-14 seq1776 93.3 4e-14 seq607 93.3 4e-14 seq2 91.5 1e-13 >seq2390 Length=8026821 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || | || ||| | |||||||||||||| || Sbjct 2843027 GTCGATTCCTTCTGGATGTTGTAGTCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 2843085 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| |||||||||| ||||| || || || | || ||||| || ||||||| ||| Sbjct 2843086 GGCGAAAATGAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCTTT 2843145 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | || ||| || ||||| ||||| | ||| ||||| || || Sbjct 2843146 GACATTGTCGATTGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGT 2843205 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 2843206 TTTCACGAAGATCTGCAT 2843223 >seq2164 Length=10083965 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || ||||| ||||| ||| || | || ||| | |||||||||||||| || Sbjct 642611 GTGGATTCCTTCTGAATGTTGTAATCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 642553 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | |||||||| ||||| || || || | || ||||| || ||||||| ||| Sbjct 642552 GGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTT 642493 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | || ||| |||||||| ||||| | ||| ||||| || || Sbjct 642492 GACATTGTCGATGGTGTCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGT 642433 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 642432 TTTCACGAAGATCTGCAT 642415 >seq896 Length=2616551 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || | || ||| | |||||||||||||| || Sbjct 1343345 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 1343287 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||| || ||||| || || || | || ||||| || ||||||| ||| Sbjct 1343286 GGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTT 1343227 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||| | || ||| |||||||| ||||| | ||| ||||| || || Sbjct 1343226 CACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGT 1343167 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 1343166 TTTCACGAAGATCTGCAT 1343149 >seq2618 Length=3490594 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || | || ||| | |||||||||||||| || Sbjct 3445159 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 3445217 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | |||||||| ||||| || || || | || ||||| || ||||||| ||| Sbjct 3445218 GGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTT 3445277 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | || ||| || ||||| ||||| | ||| ||||| || || Sbjct 3445278 GACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGT 3445337 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 3445338 TTTCACGAAGATCTGCAT 3445355 >seq1009 Length=6422589 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | |||| ||||||| |||||||| ||| Sbjct 510214 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCAAGCTGTTTTCCG 510155 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | || || || || |||||| | ||| Sbjct 510154 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTC 510095 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| || |||||| ||||| ||||| | ||| || || || ||| Sbjct 510094 ACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCAGTTAGGGTT 510035 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 510034 TTCACGAATATCTGCAT 510018 >seq993 Length=2602326 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | || |||||||||||||||| ||| Sbjct 374616 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTCGAGCTGTTTTCCG 374557 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || || || || | || || || || |||||| | ||| Sbjct 374556 GCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGTCTTC 374497 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| || |||||| ||||| ||||| | ||| || || || ||| Sbjct 374496 ACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAGGGTT 374437 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 374436 TTCACGAATATCTGCAT 374420 >seq863 Length=2839217 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| |||||||||||||| || | |||| | || ||||| || || || Sbjct 2112974 GTGGATTCTTTCTGAATATTGTAGTCAGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCT 2112915 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || ||||| || | ||||| ||||| ||| || ||||| Sbjct 2112914 GCAAAGATTAGTCTCTGCTGGTCCGGGGGAATCCCCTCCTTATCCTGGATTTTAGTTTTC 2112855 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || ||||| |||| | ||||| ||||| || || | || || |||| ||| Sbjct 2112854 ACATTATCAACAGTATCTGAGCTCTCAACCTCTAGGGTGATGGTCTTCCCAGTCAAAGTC 2112795 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| || ||||| Sbjct 2112794 TTGACAAAAATCTGCAT 2112778 >seq3251 Length=7052893 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| || ||||| || |||||||| ||| ||| || | || || | ||| ||||| Sbjct 3481197 GTAGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGC-CATCATCCAACTGCTTACC 3481255 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || ||||| || | |||||| ||||| || ||| | || Sbjct 3481256 AGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATTTTGGTCTT 3481315 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||| || | | || || || || || || | ||||| ||||| || Sbjct 3481316 GACATTCTCAATAGTATCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 3481375 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||||||||||||| Sbjct 3481376 TTTCACAAAGATTTGCAT 3481393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | |||||| | |||| || || ||||| || || ||||||||||| || || Sbjct 3480711 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 3480770 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| | | | || || | ||| || ||||| | || || | ||| || || || || Sbjct 3480771 AATG-TCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGG 3480829 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||| | || | | | || | |||||| | | |||||| Sbjct 3480830 AATTCCCTCCTTGTCCTGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAAC 3480889 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||| || || || | ||| || || ||||| ||||| || || |||||| || Sbjct 3480890 TTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCATACCT 3480941 >seq1776 Length=5111350 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| |||||||||||||| || |||| || | || || ||||| || || Sbjct 1204374 GTCGATTCTTTCTGAATATTGTAGTCAGCGAGTGTTCTGC-CATCCTCCAGCTGCTTTCC 1204316 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || |||||||| || || || || | ||||| ||||| ||||| | || Sbjct 1204315 AGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTT 1204256 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | ||||| || |||||||| | |||||| || ||||| Sbjct 1204255 AACATTGTCGATTGTGTCAGAACTCTCAACCTCGAGAGTTATGGTTTTGCCGGTAAGAGT 1204196 Query 27230 TTTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 1204195 CTTAACAAAGATTTGCAT 1204178 >seq607 Length=2562756 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || |||||||| ||| ||| || | || || | ||| ||||| Sbjct 507218 GTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGC-CATCATCCAACTGCTTACC 507160 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || ||||| || | |||||| ||||| || ||| | || Sbjct 507159 AGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCTTGAATTTTGGTCTT 507100 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | || || || || ||||| | || || ||||| || Sbjct 507099 GACATTCTCAATAGTGTCAGAAGTCTCGACCTCGAGGGTTATGGTCTTCCCAGTCAGGGT 507040 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||||||||||||| Sbjct 507039 TTTCACAAAGATTTGCAT 507022 >seq2 Length=8241039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||| ||| | | || |||||||| ||||| || |||||| | | Sbjct 3865211 CTTTCTGGATGTTGTAATCGGCAAGAGTACGGTCGTCTTCAAGCTGCTTTCCGGCGAAGA 3865270 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 ||| |||||||||||| || | | || ||||| || ||| || || | | | | Sbjct 3865271 TGAAACGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGACGTTGT 3865330 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | || || | | |||||| || || || || | ||| ||||| ||||||||||||| Sbjct 3865331 TAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAA 3865390 Query 27238 AGATTTGCAT 27247 | |||||||| Sbjct 3865391 ATATTTGCAT 3865400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424916346396432