Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2390 122 1e-22 seq2087 116 5e-21 seq280 116 5e-21 seq3031 105 8e-18 seq1371 100 4e-16 seq2357 96.9 4e-15 >seq2390 Length=8026821 Score = 122 bits (134), Expect = 1e-22 Identities = 279/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| ||| | || ||||| | | |||||| Sbjct 4596759 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 4596700 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | ||| ||||| || ||||||||| || | Sbjct 4596699 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 4596640 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| || | |||| | || || |||||||| ||||||| || ||||| || || Sbjct 4596639 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGC 4596580 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| || | | || |||||||| || | || ||||||||||||||| Sbjct 4596579 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 4596520 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 || || || || | || |||| | || || || || ||| | ||| || || | Sbjct 4596519 ATTTCAACGAACTCTGACCCAGA--AATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 4596462 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || || || || ||||||||||| |||||| || | || || | || | Sbjct 4596461 TAGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGCGGGCCAACAAGCAGAACACCCTTAG 4596402 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 |||| ||| ||| || | | || || |||| || ||||| ||||||| ||| Sbjct 4596401 GGATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCAGAAATTCCACAACCTC 4596344 >seq2087 Length=2955978 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| |||||||||||||| ||||| | || || ||||| | |||| Sbjct 1897258 TGAGGCCTTGGTGTGCCAGCATTGAAGAGAGTTGGAGAAGCATGGGTGAACCACCTTTGG 1897317 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| || |||||||| | | | || || || || ||| |||||| || | || Sbjct 1897318 GACATCAAGTGGTATGTCTTGATGGCCGACTCGATATCATCCTTGTGGATCCCAACAGCA 1897377 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA- 112119 |||| ||| ||||||| ||| || | |||| | | || | || | | ||||| Sbjct 1897378 ACCCTCATCAACATGTGCTGAGGTCTCTCCACAACTGTCCCTTGGACCTTCAGGAGATAT 1897437 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | || ||||||||||||| | ||||||| || || | ||| ||||||| Sbjct 1897438 GATC-TCTCAAGGGTTTTAAAACCAAAGAAATCATAGTCAAAGTCCCG 1897484 Score = 82.4 bits (90), Expect = 1e-10 Identities = 365/564 (65%), Gaps = 23/564 (4%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || || ||||| || || || || || |||||| || ||| ||||| || || Sbjct 719020 TGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCGGCATTAGCCCA 719079 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 ||||| || | ||| | || | ||| || |||||||||||| || || || ||||| Sbjct 719080 CGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAAAATCCCTTCAACACAA 719139 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCATTTCATTGC 122849 ||||| |||| | | || || || || || || |||||| ||| | || Sbjct 719140 GCAAAAGCAATTAACCTCTCAGCAAACGATTCAGCAC----CATCAATCCAACGAAGAGC 719195 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 ||| | |||||||||| || ||| || | ||||| || || ||| | || || Sbjct 719196 CCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGATG--GGTT 719253 Query 122910 TTCAGAT--CCATCCTTAATGTA--TTTGTCAATCAATTTTGAATATGTTTCGCCATGAA 122965 || || | ||| || || || ||| | || || || || |||| |||| Sbjct 719254 TTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAA--GAGAGTACATTTCAGAGTGAA 719311 Query 122966 CCATTTCATTATGGC--ATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTC 123023 ||||| ||||| ||| | | ||||| | ||| ||||| | ||| ||||| Sbjct 719312 TGTTTTCA--ATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGGACCTC 719369 Query 123024 ATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGC 123083 | | || | || |||||| | ||| || || || || | || ||||| || Sbjct 719370 TTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGAAGGC 719429 Query 123084 CAGGATGTACTTTATGAATTTCTTTTCAT-TTTCATTCAG--GGTCTTCCAGTCGTCAAG 123140 ||||||| | ||||| | || ||| | || || ||| | ||||| || Sbjct 719430 GAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCAGTGACGAAC 719489 Query 123141 ATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTTTATAGA 123199 ||||| || | ||| |||||||| |||||||| | || || ||| ||||| || | Sbjct 719490 ATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATG-AAGCTTCAGCTTTTTTGTACA 719548 Query 123200 GTTCCCAGAGTTGTGGATACTTCA 123223 |||||||| |||||| || |||| Sbjct 719549 TTTCCCAGATTTGTGGGTA-TTCA 719571 >seq280 Length=2177796 Score = 116 bits (128), Expect = 5e-21 Identities = 228/335 (68%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| ||| | || ||||| | | |||||| Sbjct 1748357 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 1748298 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | ||| ||||| || ||||||||| || | Sbjct 1748297 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 1748238 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| || | |||| | || || |||||||| ||||||| || ||||| || || Sbjct 1748237 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 1748178 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| || | | || |||||||| || | || ||||||||||||||| Sbjct 1748177 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 1748118 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 || || || || | || |||| | || || || || ||| | ||| || || | Sbjct 1748117 ATTTCAACGAACTCTGACCCAGA--AATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 1748060 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | || || || || |||||||| || |||||| Sbjct 1748059 TAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGC 1748025 >seq3031 Length=105041 Score = 105 bits (116), Expect = 8e-18 Identities = 194/282 (69%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || || ||||| |||||||||||| | Sbjct 94187 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 94130 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | |||| | || || ||||||||||||||||| || ||||| Sbjct 94129 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 94070 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || || | ||| || | ||||| | ||| | ||||| || ||||| Sbjct 94069 CAAGGAGCCTTACTCTTC----GCCTTCTCAAACAAATCCCTCACCCTGGAAGCTCCCAC 94014 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 ||||||||||| ||||||||| | | || | ||| | ||| || ||| | || Sbjct 94013 ACCAACAAACAGCTCCACAAACTCAGAAGCTGCACACGAAAAGAACGGCACACCGGCCTC 93954 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| |||| |||| || | | |||||||| || || || Sbjct 93953 ACCAGCGACCGCTCTCGCCAACAATGTCTTTCCGGTTCCAGG 93912 >seq1371 Length=8752182 Score = 100 bits (110), Expect = 4e-16 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || ||||||||||| ||||| | || || ||||| | |||| Sbjct 2960890 TGAGGCCTTGGTGTGCCCGCATTGAAGAGAGTTGGAGAAGCATGGGTGAACCACCTTTGG 2960949 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| || ||| |||| | | | || || || || ||| |||||| || | || Sbjct 2960950 GACATCAAGTGGTACGTCTTGATGGCCGATTCGATATCATCCTTGTGGATCCCAACAGCA 2961009 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGT-TGAAGATA 112119 |||| ||| | ||||| ||| || | |||| | | || | || || | | ||||| Sbjct 2961010 ACCCTCATCAGCATGTGCTGCGGTCTCTCCACAACCGT-CCCTTGAACCTTCAGGAGATA 2961068 Query 112120 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | || |||| |||||||||| ||||||| || || | ||| |||||| Sbjct 2961069 TGATC-TCTCGAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCC 2961115 >seq2357 Length=1489797 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || || || || |||||||||||| | Sbjct 961590 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGCTCCCTCTCATCATTTCC--A 961647 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | |||| | || || |||||||| |||||||| || ||||| Sbjct 961648 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAATAAACACAATG 961707 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | | || | ||||| | ||| | ||||| || |||||||| Sbjct 961708 CAAGG-CGCTTTACTCTTCGCCTTCTCAAACAAATCCCTCACCCTGGAAGCTCCCACACC 961766 Query 11716 AACAAACATCTCCACAAA 11733 |||||||| ||||||||| Sbjct 961767 AACAAACAGCTCCACAAA 961784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628004633505600