Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq280 89.7 6e-13 seq2390 86.0 8e-12 seq1371 86.0 8e-12 >seq280 Length=2177796 Score = 89.7 bits (98), Expect = 6e-13 Identities = 297/451 (66%), Gaps = 22/451 (5%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| ||||| | | | ||| |||||| || || | ||| || || || Sbjct 1748387 TCAAAGCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCAGCA 1748328 Query 14126 ATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 | |||| ||| || || |||| |||||||||||||||||||| | || ||||| Sbjct 1748327 ACAACAATGATACCAGT---GTTACCCTCAAAGCCATCCATCTCAGTTAGAAGCTGATTC 1748271 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGC---ATACCACCCGCACTGCGTTGCTTACCG 14239 | || ||||| | ||||||||| | | || ||| | || | |||| | || Sbjct 1748270 AATGTCTGTTCCCTTTCATCATTTCCTCCCCCGATTCCA---GTACCTCTTTGCCTTCCT 1748214 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACGGGCAACTTCAAA 14298 || || ||||||||||| | || || || || || |||||| | | ||| ||| Sbjct 1748213 ACTGCATCAATTTCATCAACAAACACAATGCAAGGAGCATTTTCTTTTGCCTTCTTGAAA 1748154 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 14358 | ||| ||||||| || || ||||| |||||||| || || || | | | || Sbjct 1748153 -AGATCGCGCACTCGAGATGCTCCCACACCAACAAACATTTCAACGAACTCTGACCCAGA 1748095 Query 14359 ACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417 | || | || || || || || ||| || || || || || || || ||||| | Sbjct 1748094 A-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAATAGCCTTAGCCAGTAGAGTCTTTC 1748036 Query 14418 CCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAAAG 14476 | |||||||| || | || ||| |||| ||||| | ||| || || || || Sbjct 1748035 CTGTCCCTGGCGGGCCAACAAGCAGGACACCCTTAGGGATGCGGGCTCCAACAGC---AG 1747979 Query 14477 T--AGCGTTCAGGTTGTTTAAGGAAGTCCAC 14505 | | | |||||||| ||| ||||| ||||| Sbjct 1747978 TAAACCTTTCAGGTTTTTTCAGGAATTCCAC 1747948 >seq2390 Length=8026821 Score = 86.0 bits (94), Expect = 8e-12 Identities = 296/451 (66%), Gaps = 22/451 (5%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| ||||| | | | ||| |||||| || || | ||| || || || Sbjct 4596789 TCAAAGCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCAGCA 4596730 Query 14126 ATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 | |||| ||| || || |||| |||||||||||||||||||| | || ||||| Sbjct 4596729 ACAACAATGATACCAGT---GTTACCCTCAAAGCCATCCATCTCAGTTAGAAGCTGATTC 4596673 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGC---ATACCACCCGCACTGCGTTGCTTACCG 14239 | || ||||| | ||||||||| | | || ||| | || | |||| | || Sbjct 4596672 AATGTCTGTTCCCTTTCATCATTTCCTCCCCCGATTCCA---GTACCTCTTTGCCTTCCT 4596616 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACGGGCAACTTCAAA 14298 || || ||||||||||| | || || || || || |||||| | | ||| ||| Sbjct 4596615 ACTGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTTTCTTTTGCCTTCTTGAAA 4596556 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 14358 | ||| ||||||| || || ||||| |||||||| || || || | | | || Sbjct 4596555 -AGATCGCGCACTCGAGATGCTCCCACACCAACAAACATTTCAACGAACTCTGACCCAGA 4596497 Query 14359 ACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417 | || | || || || || || ||| || || || || || || || ||||| | Sbjct 4596496 A-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAATAGCCTTAGCCAGTAGAGTCTTTC 4596438 Query 14418 CCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAAAG 14476 |||||||||| || | || || |||| ||||| | ||| || || || || Sbjct 4596437 CCGTCCCTGGCGGGCCAACAAGCAGAACACCCTTAGGGATGCGGGCTCCAACAGC---AG 4596381 Query 14477 T--AGCGTTCAGGTTGTTTAAGGAAGTCCAC 14505 | | | |||||||| ||| || || ||||| Sbjct 4596380 TAAACCTTTCAGGTTTTTTCAGAAATTCCAC 4596350 >seq1371 Length=8752182 Score = 86.0 bits (94), Expect = 8e-12 Identities = 378/585 (65%), Gaps = 20/585 (3%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || || ||||| || || || || || ||||||||| | || Sbjct 1700186 GGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAATCC 1700245 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| | || ||||| || | |||||| || | || || ||||||||||| || Sbjct 1700246 TGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAAAT 1700305 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAA 130193 ||| || ||||| || || |||| | | ||||||||| || | | || ||||| Sbjct 1700306 CCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGATTCAGCAC----CATCAA 1700361 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||| | ||||| | ||||| |||| | ||| |||| || | || || || Sbjct 1700362 TCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAA 1700421 Query 130254 AGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312 | || | | ||| | | | |||||||||||| | |||| || || || || Sbjct 1700422 AAAGATGGGT-TTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATT 1700480 Query 130313 TCGCCATGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 130370 || || | ||||| ||||| || | | ||||||| ||| ||||| | Sbjct 1700481 TCAGAGTGAATGTTTTCA--ATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 1700538 Query 130371 TCTGTACCTCATCTGCAAAATTGTT--ATTGATATTCTCAAAAACAATTCCATCGGACCC 130428 ||| ||||| || || | | || || |||||| | ||| || || || || | Sbjct 1700539 CCTGAACCTC--CTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGC 1700596 Query 130429 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCAT-TCTCGTTCAG--GGTCTT 130485 || || || || ||||| | | ||||| | |||||| | | ||| || ||| | Sbjct 1700597 GGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTC 1700656 Query 130486 CCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAG 130544 ||||| || ||| | ||| ||||| || || || |||||||| | || || || Sbjct 1700657 CCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATG-AAGCTTCAG 1700715 Query 130545 CCTTCTTATAGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAACA 130589 | || || || | |||||||| || || || | | ||||||| Sbjct 1700716 CTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACA 1700760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618408251686160