Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2390 116 4e-21 seq280 113 5e-20 seq3031 109 6e-19 seq2357 100 3e-16 seq1371 98.7 1e-15 seq2087 93.3 5e-14 >seq2390 Length=8026821 Score = 116 bits (128), Expect = 4e-21 Identities = 230/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | |||| ||||| || | | ||||| Sbjct 4596759 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 4596700 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | ||| || || | || ||||||| ||||||||| || | Sbjct 4596699 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 4596640 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| || | |||| |||| || |||||||| ||||||| || || ||||| || Sbjct 4596639 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGC 4596580 Query 9737 TGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795 |||||| | | ||| ||| ||||| || || || || |||||||||||||| Sbjct 4596579 GCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAACAAA 4596521 Query 9796 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9854 ||| || || || | || | ||| || | || || || ||| || ||| || |||| Sbjct 4596520 CATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 4596462 Query 9855 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 | || || || |||||||| ||||| |||||| Sbjct 4596461 TAGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGC 4596427 >seq280 Length=2177796 Score = 113 bits (124), Expect = 5e-20 Identities = 229/335 (68%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | |||| ||||| || | | ||||| Sbjct 1748357 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 1748298 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | ||| || || | || ||||||| ||||||||| || | Sbjct 1748297 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 1748238 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| || | |||| |||| || |||||||| ||||||| || || ||||| || Sbjct 1748237 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 1748178 Query 9737 TGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795 |||||| | | ||| ||| ||||| || || || || |||||||||||||| Sbjct 1748177 GCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAACAAA 1748119 Query 9796 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9854 ||| || || || | || | ||| || | || || || ||| || ||| || |||| Sbjct 1748118 CATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 1748060 Query 9855 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 | || || || |||||||| || || |||||| Sbjct 1748059 TAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGC 1748025 >seq3031 Length=105041 Score = 109 bits (120), Expect = 6e-19 Identities = 253/377 (67%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || || ||||| ||||||| |||||||| | Sbjct 94187 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 94130 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || || | | |||| | || || ||||||||||||||||| || || ||| Sbjct 94129 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 94070 Query 9731 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 9784 || || || | ||||| | ||||| | ||||| ||| || | || ||| Sbjct 94069 CAAGGAGCCTTACTCTTCGCCTTC----TCAAACAAATCCC--TCACCCTGGAAGCTCCC 94016 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 ||||||||||||| ||||||||| | | || | ||| | ||| || ||| | Sbjct 94015 ACACCAACAAACAGCTCCACAAACTCAGAAGCTGCACACGAAAAGAACGGCACACCGGCC 93956 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| || | |||| || | | ||||| || || || || ||| | ||||| Sbjct 93955 TCACCAGCGACCGCTCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGCCCCACAAGGAGA 93896 Query 9905 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||| || || || || | || ||| | ||||| | ||| | ||| ||| Sbjct 93895 CACCCTTTTGGGATTTTAGCCCCCAATGCAGTGTACTTATCAGGGTTCTTCAAAAAGTCC 93836 Query 9965 ACAATTTCTTCCAATTC 9981 |||| ||| | |||||| Sbjct 93835 ACAACTTCCTGCAATTC 93819 >seq2357 Length=1489797 Score = 100 bits (110), Expect = 3e-16 Identities = 332/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| | ||||| | || | || |||||| | |||| | ||| || || Sbjct 961500 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 961559 Query 9583 GGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 || | |||| | |||| || | | | ||| ||||||||||| ||||| | || Sbjct 961560 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 961617 Query 9641 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9698 || ||||| || |||| |||||||| | | | ||| || || | | |||| | | Sbjct 961618 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 961675 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 9756 | || |||||||| |||||||| || || ||||| || | ||| | | || || || Sbjct 961676 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTC-TTCGCCTTCTC 961733 Query 9757 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9814 ||| | ||||| ||| || | || |||||||||||||||| ||||||||| | | Sbjct 961734 AAACAAATCCC--TCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAA 961791 Query 9815 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 || | ||| | ||| || ||| | ||||| || | || | || | | ||| Sbjct 961792 GCTGCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTC 961851 Query 9875 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 9934 || || || || || ||| | ||||| ||| ||| || || || || | || Sbjct 961852 TTTCCGGTTCCAGGGGGCCCCACAAGGAGACACCCTTTTGGGATTTTAGCCCCCAATGCA 961911 Query 9935 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTC-ATCTTTGGCGGC 9993 ||| | ||||| | ||| | ||| ||||||| ||| | |||||| | ||| | | | Sbjct 961912 GTGTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTCTAGCTTAGCCTG- 961970 Query 9994 GTCAATCCCCTCAACATCGGTAAA 10017 ||| || ||||||||| ||| Sbjct 961971 ATCAGCACCGGCAACATCGGCAAA 961994 >seq1371 Length=8752182 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 94789 |||| | || ||| || | ||||| || ||||||||| | ||| ||||| || Sbjct 1700409 AAACTATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATG----GT 1700354 Query 94790 CGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 | || ||||||||| | | | || ||||| |||||||| || || ||||||||| Sbjct 1700353 GCTGAATCGTTTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCT 1700294 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 || |||||| | || | |||||||| ||||| || | |||||||| | |||| Sbjct 1700293 GGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGGGTTGATGCCAGGATTAACCTTC 1700234 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || |||||||| || || || ||||| || || ||| || ||||| Sbjct 1700233 TCGAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGC 1700187 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCA-AC 104195 || |||| |||| || || |||||| |||||||||| |||| || | ||||| | | Sbjct 2961116 AGGGACTTTGACTATGATTTCTTTGGTTTCAAAACCCTCGAGA-GATCATATCTCCTGAA 2961058 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 || || | || ||| |||| | || ||| ||||| | ||| | || || | || | Sbjct 2961057 GGTTCAAGGGACGGTTG-TGGAGAGACCGCAGCACATGCTGATGAGGGTTGCTGTTGGGA 2960999 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 | || ||| || || || || | | | |||| ||| || |||||||||| | || Sbjct 2960998 TCCACAAGGATGATATCGAATCGGCCATCAAGACGTACCACTTGATGTCCCAAAGGTGGT 2960939 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || || | ||||| ||||||||||| || |||||||| || ||| Sbjct 2960938 TCACCCATGCTTCTCCAACTCTCTTCAATGCGGGCACACCAAGGCCTCAA 2960889 >seq2087 Length=2955978 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCA-ACGGC 104198 |||| |||| || || |||||| | ||||||||||||| || | ||||| | | || Sbjct 1897481 GACTTTGACTATGATTTCTTTGGTTTTAAAACCCTTGAGA-GATCATATCTCCTGAAGGT 1897423 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 | | || ||| |||| | || ||| ||||||| ||| | || || | || || | Sbjct 1897422 CCAAGGGACAGTTG-TGGAGAGACCTCAGCACATGTTGATGAGGGTTGCTGTTGGGATCC 1897364 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 | ||| || || || || | | | |||||||| || |||||||||| | ||||| Sbjct 1897363 ACAAGGATGATATCGAGTCGGCCATCAAGACATACCACTTGATGTCCCAAAGGTGGTTCA 1897304 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || || | ||||| |||||||||||||| |||||||| || ||| Sbjct 1897303 CCCATGCTTCTCCAACTCTCTTCAATGCTGGCACACCAAGGCCTCAA 1897257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583235384410640