Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1371 132 5e-26 seq2087 125 8e-24 >seq1371 Length=8752182 Score = 132 bits (146), Expect = 5e-26 Identities = 298/440 (68%), Gaps = 16/440 (4%) Strand=Plus/Minus Query 59988 ATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 || |||||||| || || ||||| || ||||||||||| ||||| | || |||||| Sbjct 1700329 ATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTCCATCTTCTGG 1700270 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 |||||||||||||| | ||||| || | | ||||| ||||||||||| || || ||| Sbjct 1700269 CTCAAAAAGCGTGGGTTGATGCCAGGATTAACCTTCTCGAACGAGCTGATATCGCGAGAC 1700210 Query 60108 GAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGGA-AAAATGC-- 60164 || || || || || ||||| || | |||| || | || || | || | || Sbjct 1700209 GAAGGGCTTCACTGTGATTTTGC-CTG-CCTGCTATACA-GCTTACTGAAGAAGAAGCTG 1700153 Query 60165 CCTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATC 60224 | || | | || ||| ||| || || ||| | ||| | |||||| | Sbjct 1700152 AGTGTTGAGAAGGTGCAGGGGATAGTTAAGGATGCAGTCGAAATCGAGCGAGAGTTCGTA 1700093 Query 60225 ACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATT 60284 || || |||||||| || || | || ||| || || |||| ||||||||| Sbjct 1700092 ACCGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAGTACATT 1700033 Query 60285 CAGTTTGTCGCGGACCGCCTCATGGC-CCAGTTTG----GAGAAGGACCAATTTACGGCG 60339 ||||||| || || | || |||| || || | || |||| ||||||| | Sbjct 1700032 GAGTTTGTTGCAGATAGGCTGTTGGCTGCACTTGGGTGTGAAAAGG-----TTTACGGAG 1699978 Query 60340 TGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTG 60399 | | ||||| ||||| ||||||||| ||||| | |||||||||| || ||||||| Sbjct 1699977 TTCAGAACCCGTTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTG 1699918 Query 60400 AGAAGCGGGTCGGGGATTAT 60419 ||||| | || ||||| ||| Sbjct 1699917 AGAAGAGAGTTGGGGAGTAT 1699898 >seq2087 Length=2955978 Score = 125 bits (138), Expect = 8e-24 Identities = 294/437 (67%), Gaps = 10/437 (2%) Strand=Plus/Minus Query 59988 ATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 || |||||||| || || ||||| || |||||||| || || || | || |||||| Sbjct 719150 ATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGGGAGTTTTTGCTCCATCTTCTGG 719091 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 || ||||||||||| || |||||||| | | ||||| ||||||||||| || || ||| Sbjct 719090 CTTAAAAAGCGTGGGCTAATGCCGGGTTTAACCTTCTCGAACGAGCTGATATCGCGAGAC 719031 Query 60108 GAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATT-CACA-CCTATTGGA-AAAATGC 60164 || || || ||| || ||||| || ||| || ||| | || || | || | || Sbjct 719030 GAAGGGCTTCATTGTGACTTTGC-TTG----TCTGTTGTACAGCTTACTGAAGAAGAAGC 718976 Query 60165 --CCTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCA 60222 | || | |||| ||| || || || || | ||| | |||||| Sbjct 718975 TGAGTGTGGAGAAGGTTCAGGGGATAGTGAAGGATGCAGTCGATATCGAGCGAGAGTTCG 718916 Query 60223 TCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACA 60282 | || || |||||||| || || | || ||| || || |||| ||||||| Sbjct 718915 TAACTGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAGTACA 718856 Query 60283 TTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGA 60342 || ||||||| || ||| | || |||| | | || | | ||||||| || Sbjct 718855 TTGAGTTTGTTGCAGACAGACTGTTGGCTGCGCTCGGGTGCGAAAAGGTTTACGGAGTTC 718796 Query 60343 ATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGA 60402 | ||||| ||||| ||||||||| ||||| | |||||||||| || |||||||||| Sbjct 718795 AGAACCCATTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGA 718736 Query 60403 AGCGGGTCGGGGATTAT 60419 || | || ||||| ||| Sbjct 718735 AGAGAGTTGGGGAGTAT 718719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548500898031840