Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3078 86.0 7e-12 seq2821 84.2 2e-11 seq2800 84.2 2e-11 seq1863 84.2 2e-11 seq2675 82.4 8e-11 seq1178 82.4 8e-11 >seq3078 Length=3846917 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3609364 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3609423 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| ||||||||| Sbjct 3609424 TGAGCTATGAAAGCAAA 3609440 >seq2821 Length=12291897 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 |||||||| | | |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 11814950 AGACTGCTCTTGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 11814891 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| |||||||| | ||| Sbjct 11814890 CAACTGAGCTACAAGAGC 11814873 >seq2800 Length=5425390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 413261 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 413202 Query 79681 AATTGAGCTACGAAAGCA 79698 || |||||||||| |||| Sbjct 413201 AACTGAGCTACGAGAGCA 413184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 431261 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 431202 Query 79681 AATTGAGCTACGAAAGCA 79698 || |||||||||| |||| Sbjct 431201 AACTGAGCTACGAGAGCA 431184 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 412016 TGCTCTCGTTGAGAATCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 411957 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 411956 TGAGCTACGAGAGCA 411942 >seq1863 Length=3269034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 1655277 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1655336 Query 79681 AATTGAGCTACGAAAGCA 79698 || |||||||||| |||| Sbjct 1655337 AACTGAGCTACGAGAGCA 1655354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 1665166 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1665225 Query 79681 AATTGAGCTACGAAAGCA 79698 || |||||||||| |||| Sbjct 1665226 AACTGAGCTACGAGAGCA 1665243 >seq2675 Length=6218968 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 117349 ACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTT 117408 |||||| ||||| |||||| ||| || || || | ||| |||| || || || || Sbjct 4926135 ACGCGTTCCGAACTGTCCATGGGGCATTAAAAGATTGATGTTATTGGATCCAACGAAATT 4926194 Query 117409 TTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTG 117468 || |||| | ||||| || | ||| | |||||||||||||| ||||| | | | Sbjct 4926195 CTGTGCCATGCCAACAATTGTGCTTTGTATACTCGCCTCACCATGATGATAAGATGATTT 4926254 Query 117469 CTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTT- 117525 ||| | ||||| || | |||||| || || || ||||| ||| ||| ||||| Sbjct 4926255 CTCAGATACGTAACCACTGAACTGAGCAACTTT--TGCCTGACTGATCAAGTTTTTCTTA 4926312 Query 117526 GAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | ||| ||| ||| || || | ||| |||||||||| ||||| Sbjct 4926313 AATGCA-GCAAAAAGGACTTTCCTCTGTGTTGGCTTCAGCCCATC 4926356 >seq1178 Length=579557 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 11/105 (10%) Strand=Plus/Minus Query 79706 AACTCTGACCTGGCGGAATCGAACCACCGACCTAAAGATGACTGAACATCCGGATTAGAG 79765 || || |||||| ||||||||||||| ||||||||||||| ||||| || | | | Sbjct 441453 AAATCCGACCTGCCGGAATCGAACCAGCGACCTAAAGATGCCTGAA-----GGCTAATAA 441399 Query 79766 CACACTCGCTCTACAGTCTTTCGCTCTACCAATTGAGCTAAGGTC 79810 | || |||||||||| |||||| |||| |||||||||||| Sbjct 441398 CCCA------CTACAGTCTTCCGCTCTGCCAACTGAGCTAAGGTC 441360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192155062800