Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq3320 82.4 2e-11 seq2094 82.4 2e-11 seq3481 80.6 9e-11 >seq3320 Length=4692610 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201 |||| | ||| ||||||||| |||||||||| ||||||||||| |||||| | || Sbjct 2040132 TTTCGACGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 2040191 Query 21202 TTCGAATCCTGTCTCCGCAA 21221 ||| |||||||||||||||| Sbjct 2040192 TTCAAATCCTGTCTCCGCAA 2040211 >seq2094 Length=1489424 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201 |||| | ||| ||||||||| |||||||||| ||||||||||| |||||| | || Sbjct 270385 TTTCGACGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 270326 Query 21202 TTCGAATCCTGTCTCCGCAA 21221 ||| |||||||||||||||| Sbjct 270325 TTCAAATCCTGTCTCCGCAA 270306 >seq3481 Length=11062796 Score = 80.6 bits (88), Expect = 9e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 9955855 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 9955796 Query 21210 CTGTCTCCGCAA 21221 |||||||||||| Sbjct 9955795 CTGTCTCCGCAA 9955784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162518072082748