Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2671 98.7 8e-16 seq2334 89.7 4e-13 >seq2671 Length=3209100 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 ||||||||||| | ||||| | | ||| || | |||||| ||||| |||| ||| Sbjct 1888436 TGAGCAATCATACACGTCAATAGAGCGTAAGACGCAATATTAAAGGGAACCCCCAAGCCC 1888495 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 ||||||||||| | |||||||| ||| ||||| ||||| || ||||| ||||| ||||| Sbjct 1888496 ATGTCTGCTGACCGCTGGTACATTTGACAAGATAGCTCACCATTTGCTACATAGAACTG 1888554 >seq2334 Length=5254604 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 ||||||||||| | ||||| | | || || | |||||| ||||| |||| ||| Sbjct 251067 TGAGCAATCATACACGTCAATAGAGCATAAGACGCAATATTAAAGGGAACCCCCAAGCCC 251008 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 ||||||||||| | |||||||| ||| || || ||||| || ||||| ||||| ||||| Sbjct 251007 ATGTCTGCTGACCGCTGGTACATTTGACAGGATAGCTCACCATTTGCTACATAGAACTG 250949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414459190694104