Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2417 105 5e-18 seq374 89.7 4e-13 seq2 89.7 4e-13 seq1776 87.8 1e-12 seq1717 84.2 2e-11 seq530 84.2 2e-11 >seq2417 Length=2538752 Score = 105 bits (116), Expect = 5e-18 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || |||||||| ||| || |||| || |||||| | Sbjct 2309049 ATGCAGATCTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 2309108 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| ||||| || ||| ||||| ||||| |||||| |||| || | Sbjct 2309109 GATACGATTGACAAT--GTTAAAACCAAAATCCAAGACAAGGAAGGTATTCCCCCAGACC 2309166 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| ||||||| |||||||||||||| | || || | |||| |||| | |||||| Sbjct 2309167 AGCAGAGGTTAATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTG-CTGATTAC 2309225 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 2309226 AACATCCAGAAAGAG 2309240 Score = 100 bits (110), Expect = 2e-16 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || |||||||| ||| || |||| || |||||| | Sbjct 2309733 ATGCAGATCTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 2309792 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| ||||| || ||| ||||| ||||| |||||| |||| || | Sbjct 2309793 GATACGATTGACAAT--GTTAAAACCAAAATCCAAGACAAGGAAGGTATTCCCCCAGACC 2309850 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || |||||||||||||| | || || | |||| |||| | |||||| Sbjct 2309851 AGCAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTG-CTGATTAC 2309909 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 2309910 AACATCCAGAAAGAG 2309924 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || |||||||| || || |||| || |||||| | Sbjct 2309277 ATGCAGATCTTTGTTAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTTGAAAGCTCT 2309336 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| ||||| || ||| ||||| ||||| |||||| |||| || | Sbjct 2309337 GATACGATTGACAAT--GTTAAAACCAAAATCCAAGACAAGGAAGGTATTCCCCCAGACC 2309394 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || |||||||||||||| | || || | |||| |||| | |||||| Sbjct 2309395 AGCAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTG-CTGATTAC 2309453 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 2309454 AACATCCAGAAAGAG 2309468 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || || |||||||| ||| || |||| ||||| | | Sbjct 2308821 ATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTCGAGAATTCT 2308880 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||||| ||||| |||||| |||| || | Sbjct 2308881 GACACCATTGACAAT--GTCAAAACCAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 2308938 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| || ||||| ||||| ||| | || || | |||| |||| | |||||| Sbjct 2308939 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACTCTTG-CTGATTAC 2308997 Query 27967 AACATCCAAAAAGAG 27981 |||||||| || ||| Sbjct 2308998 AACATCCAGAAGGAG 2309012 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || || |||||||| || || |||| || |||||| || Sbjct 2309505 ATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTTGAAAGCTCC 2309564 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||||| ||||| ||||| |||| || | Sbjct 2309565 GACACCATTGACAAT--GTCAAAACCAAAATTCAAGACAAGGAAGGCATTCCCCCAGACC 2309622 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| | || || ||||| ||||| ||| | || || | |||| |||| | |||||| Sbjct 2309623 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACTCTTG-CTGATTAC 2309681 Query 27967 AACATCCAAAAAGAG 27981 |||||||| || ||| Sbjct 2309682 AACATCCAGAAGGAG 2309696 >seq374 Length=4160932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||| |||||||| || || | || ||||| ||| | Sbjct 3965514 AATGCAAATCTTTGTCAAGACTCTCACTGGGAAGACCATCACCCTCGAAGTCGAGAGCTC 3965573 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || ||||| ||||| || || ||||| || ||| |||| || Sbjct 3965574 CGATACTATTGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGAC 3965631 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || || |||||||| || | || || | |||| | | | || ||| Sbjct 3965632 CAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGCACCCTTGCTGACTAC 3965691 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | |||||||| | ||| | ||||| || Sbjct 3965692 AACATCCAGAAGGAGTCCACACTTCATTTGGTGCTCCGTCTTCGTGGTGG 3965741 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| || ||||| ||||| ||||| | || || || ||| || Sbjct 3965743 ATGCAGATTTTCGTGAAGACCCTTACCGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 3965802 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| | | | || || | | || ||||| |||||| | || || Sbjct 3965803 GACACCATTGACAAT-GTTAAGACCAAGATTCAG--GACAAGGAAGGTATCCCCCCAGAC 3965859 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| ||||| || || || || | || || | || | ||| |||| ||| Sbjct 3965860 CAGCAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACTTTGGCCGACTAC 3965919 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| |||| | |||||||| | |||||| | || || Sbjct 3965920 AACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTTTGAGGGGAGG 3965969 >seq2 Length=8241039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||||||||||||||| || ||| || || |||| || |||| Sbjct 3865403 AAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAAACT 3865344 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | | || || |||| ||||| ||||| ||||||||||| ||| | Sbjct 3865343 AGTGATACCATTAACAA--CGTCAAGGCTAAAATCCATGACAAAGAAGGCATTCAACCCG 3865286 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | || || || || || || |||||||| || | || ||||| || | |||| ||||| Sbjct 3865285 ATCAACAGCGTTTCATCTTCGCCGGAAAGCAGCTTGAAGACGACCGTACTCTTG-CCGAT 3865227 Query 27964 TACAACATCCAAAAAG 27979 ||||||||||| |||| Sbjct 3865226 TACAACATCCAGAAAG 3865211 >seq1776 Length=5111350 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || || || ||||| ||| || |||| || || || | Sbjct 1204406 ATGCAGATTTTTGTTAAGACCCTCACCGGGAAGACTATCACCCTTGAAGTTGAGAGTTCT 1204465 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| |||||| |||||| |||||||||||| |||| || | Sbjct 1204466 GACACTATTGATAAT--GTCAAAACAAAAATTCAAGACAAAGAAGGTATTCCCCCAGACC 1204523 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| || | || || | |||| | | | ||||||| Sbjct 1204524 AGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACA 1204583 Query 27968 ACATCCAAAAAGAG 27981 ||||||| || ||| Sbjct 1204584 ACATCCAGAAGGAG 1204597 >seq1717 Length=9716283 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| |||||||| || ||||| ||| || || | || |||||| Sbjct 1668749 AATATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATCA 1668690 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| |||||| || || ||||||||||| | || | Sbjct 1668689 TCCGACACAATCGACAAT--GTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAG 1668632 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGAT 27963 | || ||||| ||||| ||||| || ||||||||||| || | | | | |||| | ||| Sbjct 1668631 ATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTG-CAGAT 1668573 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || || | |||||||| | || | ||||| || Sbjct 1668572 TACAACATTCAGAAGGAATCGACGCTTCATTTGGTGCTTCGACTTCGTGGGGG 1668520 >seq530 Length=4616287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| ||||| || ||||| || || |||| ||||| ||| | Sbjct 1166521 AATGCAAATCTTTGTGAAGACTCTCACAGGGAAGACCATCACCCTTGAAGTCGAGAGCTC 1166462 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| ||||| || || ||||| || ||| |||| || Sbjct 1166461 CGATACCATTGATAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGAC 1166404 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| |||| || || |||||||| || | || || | |||| |||| |||| || Sbjct 1166403 CAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGCACTCTTG-CCGACTA 1166345 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| || ||| || | || ||||| | ||| | ||||| || Sbjct 1166344 CAACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCCGTCTTCGTGGTGG 1166294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355847280963522