Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq863 91.5 1e-13 seq2417 84.2 2e-11 seq3251 82.4 7e-11 >seq2 Length=8241039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 |||| || || || ||||||||||| || || ||||| |||||||| || || || || | Sbjct 3865211 CTTTCTGGATGTTGTAATCGGCAAGAGTACGGTCGTCTTCAAGCTGCTTTCCGGCGAAGA 3865270 Query 39155 TAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG 39214 | | |||||| || |||| | | || |||||||| |||||| |||| ||| | Sbjct 3865271 TGAAACGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGA-CGTTG 3865329 Query 39215 -CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | ||||| || | || || || | ||||| |||| ||||| || ||||| ||| Sbjct 3865330 TTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACA 3865389 Query 39274 AAGATTTGCATCTTT 39288 || |||||||| ||| Sbjct 3865390 AATATTTGCATTTTT 3865404 >seq863 Length=2839217 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| ||||| | |||||| || || || ||| ||||| ||||| ||||| ||| Sbjct 2112548 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 2112489 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | ||||||||||| || || ||||| || | | |||||||| | || Sbjct 2112488 AGGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGA 2112429 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | || || || ||| || || ||||| | | | || || ||| ||| Sbjct 2112428 ATGCCTTCCTTATCCTGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCT---CTCA 2112372 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| |||||| | || || |||| || |||||||| |||||||| Sbjct 2112371 ACCTCCAAAGTGATAGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 2112322 >seq2417 Length=2538752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || | |||| || || || |||||| || || || ||||| Sbjct 2309279 CATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATC 2309220 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || || | || ||||||||||| || ||||| || | | ||||||||| | Sbjct 2309219 AGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATTAACCTCTGCTGGTCTGG 2309160 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCG 39229 ||| | | || ||||| |||||| |||| | | | | | | |||||| ||| Sbjct 2309159 GGGAATACCTTCCTTGTCTTGGATTTT-GGTTTTAACATTGTCAATCGTATCAGAGCT-- 2309103 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | |||||| | || || || || || ||||||||||| ||||| Sbjct 2309102 -TTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCAT 2309049 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || | |||| || || || |||||| || || || ||||| Sbjct 2309963 CATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATC 2309904 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || || | || ||||||||||| || ||||| || | | ||||||||| | Sbjct 2309903 AGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCTGG 2309844 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCG 39229 ||| | | || ||||| |||||| |||| | | | | | | |||||| ||| Sbjct 2309843 GGGAATACCTTCCTTGTCTTGGATTTT-GGTTTTAACATTGTCAATCGTATCAGAGCT-- 2309787 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | |||||| | || || || || || ||||||||||| ||||| Sbjct 2309786 -TTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCAT 2309733 Score = 82.4 bits (90), Expect = 7e-11 Identities = 171/250 (68%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||| | || ||| ||||| | || | |||| || || || |||||| Sbjct 2309520 TAACAAAAATCTG--CATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTT 2309463 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || || || ||||| ||||| || || | || ||||||||||| || ||||| || | Sbjct 2309462 CTGGATGTTGTAATCAGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAA 2309403 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCA 39217 | ||||||||| | ||| | | || ||||| |||||| |||| | | | | | | Sbjct 2309402 CCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATTTT-GGTTTTAACATTGTCAA 2309344 Query 39218 CCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 |||||| ||| || || || | ||||| | || || || || || ||||||| Sbjct 2309343 TCGTATCAGAGCT---TTCAACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAA 2309287 Query 39275 AGATTTGCAT 39284 |||| ||||| Sbjct 2309286 AGATCTGCAT 2309277 >seq3251 Length=7052893 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || || || || |||| | ||||| | ||| || || || || Sbjct 3481202 CTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCCAACTGCTTACCAGCGAA 3481261 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGC 39210 || || | ||||||||| |||||| | | ||| || ||| ||| ||| || |||| Sbjct 3481262 GATGAGCCTCTGCTGGTCCGGTGGG-ATACCCTCCTTATCC-TGAATTTTGGTCTTGACA 3481319 Query 39211 GTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 || | | ||||| | |||||| || | ||||| | || || ||||| ||||| Sbjct 3481320 TTCTCAATAGTATCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTC 3481379 Query 39271 ACAAAGATTTGCATCT 39286 |||||||||||||||| Sbjct 3481380 ACAAAGATTTGCATCT 3481395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429527350486718