Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2087 170 2e-37 seq1371 147 2e-30 seq3481 84.2 2e-11 >seq2087 Length=2955978 Score = 170 bits (188), Expect = 2e-37 Identities = 545/834 (65%), Gaps = 26/834 (3%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| | || || ||||| |||| || Sbjct 718729 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATCCAATCGAAT 718788 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | |||| ||||| ||| || || | | || || ||| || ||| Sbjct 718789 GGGTTCTGAACTCCGTAAACCTTTTCGCACCCGAGCGCAGCCAACAGTCTGTCTGCAACA 718848 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 || || || ||||| ||||| || || ||||| || |||| | |||| || ||||| Sbjct 718849 AACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCACCGGAAGCGCA 718908 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511 | || | |||||| | || ||| || || || | | ||| | | | || || Sbjct 718909 TCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTATCCCCTGAACCTTCTCC 718968 Query 4512 ----TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 | || | || || | |||| | |||| | ||| ||||| |||||||| | Sbjct 718969 ACACTCAGCTTCTTC-TTCAGTAAG---CTGTACAACAGACAAGCAAAGTCACAATGAAG 719024 Query 4568 ACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 |||||||||| || | ||||| ||||| || || ||||| || ||||||| || | || Sbjct 719025 CCCTTCGTCTC-GCGATATCAGCTCGTTCGAGAAGGTTAAACCCGGCATTAGCCCACGCT 719083 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 |||||||||| || || | | ||| ||| || ||||| || ||||| || |||| Sbjct 719084 TTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAAAATCCCTTCAACACAAGCAA 719143 Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 | || | ||| | | ||||| || || |||||| | ||||| | Sbjct 719144 AAGCAATTAACCTCTCAGCAAACGATTCAGCACCATC---AATCCAACGAAGAGCCCAAT 719200 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTT----T 4802 ||| || |||||||| || || || || | || || ||| | | |||| | Sbjct 719201 CAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGATGGGTTTTAAGGT 719260 Query 4803 TCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTT 4862 | ||| ||| |||||||| |||| || || ||||||||||| || || ||| Sbjct 719261 TAGAAT----CTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAGAGTGAATGTTT 719316 Query 4863 TCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 || || || || || || || || ||||| | |||||| | || || || || || Sbjct 719317 TCAATGGCGATTTGGAAGCCATAGAAAGCG-CGAGCTTCAGCAACCTGGACCTCTTTCAT 719375 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 |||||| | | | || ||| ||||| |||||| || || || || || | | Sbjct 719376 GAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGAAGGCGAGGAT 719435 Query 4982 ATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTT--TTTTCCAGTGGGGCAAATCTTT 5038 || | || || | ||||||||| | | ||||| ||| |||||| | | ||||| Sbjct 719436 GTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCAGTGACGAACATCTTG 719495 Query 5039 AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 | | ||| |||||||| ||||||| || || ||||| |||||||||||||| Sbjct 719496 CGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGTACAT 719549 >seq1371 Length=8752182 Score = 147 bits (162), Expect = 2e-30 Identities = 542/836 (65%), Gaps = 30/836 (4%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| | || || ||||| |||| ||| Sbjct 1699908 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATCCAATCGAAC 1699967 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | |||| ||||||||| || || | | || | || || ||| Sbjct 1699968 GGGTTCTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCCAACAGCCTATCTGCAACA 1700027 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 || || || ||||| ||||| || || ||||| || |||| | |||| || ||||| Sbjct 1700028 AACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCACCGGAAGCGCA 1700087 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511 | || | |||||| | || || || || || | | ||| | | | || || Sbjct 1700088 TCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTAACTATCCCCTGCACCTTCTCA 1700147 Query 4512 ----TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 | || | || || | |||| | | | | || ||||||||||| || | Sbjct 1700148 ACACTCAGCTTCTTC-TTCAGTAAG---CTGTATAGCAGGCAGGCAAAATCACAGTGAAG 1700203 Query 4568 ACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 |||||||||| || | ||||| ||||| || || |||||||| ||||| || || | || Sbjct 1700204 CCCTTCGTCTC-GCGATATCAGCTCGTTCGAGAAGGTTAATCCTGGCATCAACCCACGCT 1700262 Query 4627 TTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGC 4684 |||| ||||| || || ||| | || | ||||| ||||| || ||||| || || Sbjct 1700263 TTTTGAGCCAGAAGATGGAGCAGAAACTT--CCAGAGAAGAAAATCCCTTCAACACAAGC 1700320 Query 4685 AAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCA 4744 ||| || | ||| | | ||||| || || |||||| | ||||| Sbjct 1700321 AAAAGCAATTAACCTCTCAGCAAACGATTCAGCACCATC---AATCCAACGAAGAGCCCA 1700377 Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTT--- 4801 | ||| || |||||||| || || || || | || || ||| | | |||| Sbjct 1700378 ATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGATGGGTTTTAAG 1700437 Query 4802 -TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 || ||| ||| || ||||| |||| || || ||||||||||| || || | Sbjct 1700438 GTTAGAAT----CTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAGAGTGAATGT 1700493 Query 4861 TTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 |||| || || || || || || || ||||| | |||||| | || ||||| || || Sbjct 1700494 TTTCAATGGCGATTTGGAAGCCATAGAAAGCG-CGAGCTTCAGCAACCTGAACCTCCTTC 1700552 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||||| | | | || ||| || || ||||| || || || || || | Sbjct 1700553 ATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAGAAGGCGAGG 1700612 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTT--TTTTCCAGTGGGGCAAATCT 5036 | || | || || | ||||||||| | | ||||| | ||| |||||| | | |||| Sbjct 1700613 ATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGACGAACATCT 1700672 Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 | | | ||| |||||||| ||||||| || || ||||| |||||||||||||| Sbjct 1700673 TGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGTACAT 1700728 >seq3481 Length=11062796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| ||||||||||| || | |||||||| || || || ||||| ||| | ||||| Sbjct 10815768 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 10815709 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| | ||||||||||||||||||||||| || Sbjct 10815708 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGC 10815670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427031456530838