Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2087 239 6e-58 seq1371 223 5e-53 >seq2087 Length=2955978 Score = 239 bits (264), Expect = 6e-58 Identities = 601/902 (67%), Gaps = 21/902 (2%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || || || | ||||| || |||||||| || |||| | || || Sbjct 718713 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 718772 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTA--TAAAtttttttAAATCCTAATTCTGAA 47966 ||||| |||| ||||| || ||| | | |||| |||| | || | | | Sbjct 718773 CTCCATCCAATCGAATGGGTT--CTGAACTCCGTAAACCTTTTCGCACCCGAGCGCAGCC 718830 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | |||||| |||||||| || || || || |||||| ||||| ||||| || | Sbjct 718831 AACAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACC 718890 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 || || || || || || || || | |||||| | |||||| ||| |||||| | | Sbjct 718891 AGCTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACT 718950 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACA--AATGTTTAAACATTAAACATG 48144 ||| ||| | ||| |||| | | | || || | || || | ||| | Sbjct 718951 ATCCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGTA--CAACAGACAAG 719008 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||| ||||||||||| ||||| |||| || | ||||| || || || | ||| | Sbjct 719009 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 719068 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AAGAATATG 48263 ||||||| ||||| ||||| ||||| || || | || ||| ||| | | ||||| || Sbjct 719069 GCATTAGCCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATC 719127 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATC 48320 ||||| || ||||| || | | ||||| | ||| | ||| | ||| Sbjct 719128 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AAC--GATTCAGCACCATCAATC 719184 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || || | |||||||||||||||||||| |||||||| || ||||| || ||| ||| Sbjct 719185 CAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAA 719244 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440 ||| | |||| || |||||| | ||||| |||| | |||| |||||||| Sbjct 719245 AGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCA 719304 Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500 |||||||| |||||||| || || || || || || ||| | ||||| | | ||| Sbjct 719305 GAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGG 719364 Query 48501 ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 ||||| | |||| | | || | |||||| ||||| || ||| || || || Sbjct 719365 ACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAG 719424 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA----GTTTATTCCAGTC 48616 || || | | || | || |||| | ||||| ||| || | | || | ||||| Sbjct 719425 AAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTT-TCCCAGTG 719483 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 | | ||||| || | ||| |||||||| || ||||| ||||| || || |||||||| Sbjct 719484 ACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTT 719543 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTT 48736 ||||| | ||| || | ||||| |||||||| ||| ||||||| ||| |||| Sbjct 719544 GTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTC 719603 Query 48737 TG 48738 || Sbjct 719604 TG 719605 >seq1371 Length=8752182 Score = 223 bits (246), Expect = 5e-53 Identities = 595/900 (66%), Gaps = 17/900 (2%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || || || | ||||| || |||||||| || |||| | || || Sbjct 1699892 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 1699951 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTA--TAAAtttttttAAATCCTAATTCTGAA 47966 ||||| |||| || || || ||| | | |||| |||| | | || | | | | Sbjct 1699952 CTCCATCCAATCGAACGGGTT--CTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCC 1700009 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | ||| ||||||||||| || || || || |||||| ||||| ||||| || | Sbjct 1700010 AACAGCCTATCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACC 1700069 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 || || || || || || || || | |||||| | ||||| ||| |||||| | | Sbjct 1700070 AGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTAACT 1700129 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACA--AATGTTTAAACATTAAACATG 48144 ||| ||| | || |||| | | | || || | || | | || | Sbjct 1700130 ATCCCCTGCACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGCTGTATAGC--AGGCAGG 1700187 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||||||||| ||||| ||||| |||| || | ||||| || || || | || | Sbjct 1700188 CAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAATCCTG 1700247 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||| | ||||| ||||||||||| || || | |||| |||||| ||||| || | Sbjct 1700248 GCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAAATCC 1700307 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATCC 48321 |||| || ||||| || | | ||||| | ||| | ||| | |||| Sbjct 1700308 CTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AAC--GATTCAGCACCATCAATCC 1700364 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 | || | |||||||||||||||||||| |||||||| || ||||| || ||| ||| | Sbjct 1700365 AACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAA 1700424 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 || | |||| || |||||| | |||||| |||| | |||| |||||||| | Sbjct 1700425 GATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAG 1700484 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 ||||||| |||||||| || || || || || || ||| | ||||| | | ||| | Sbjct 1700485 AGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGAA 1700544 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 ||||| | |||| | | || | |||||| || || || || || || || | Sbjct 1700545 CCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAGA 1700604 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG-TCAGTT--TATTCCAGTCAT 48618 | || | | || | || |||| | ||||| || | | || | | | ||||| | Sbjct 1700605 AGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGAC 1700664 Query 48619 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTAT 48678 | ||||| || | ||| |||||||| || ||||| ||||| || || |||||||| | Sbjct 1700665 GAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGT 1700724 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738 |||| | ||| || | ||||| |||||||| ||| ||||||| ||| |||| || Sbjct 1700725 ACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCTG 1700784 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 |||||||| || | ||||| || || | |||| | || | || ||| || | ||| || Sbjct 2960554 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 2960613 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| ||||| || ||| |||||||||||| | || || || || | || Sbjct 2960614 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 2960673 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||| || ||||| | || || | | || | ||| || |||| ||||| || || Sbjct 2960674 ACCCCAATACCTCCAG-CAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATAT 2960732 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| ||||||| | ||| || |||||| Sbjct 2960733 CCCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 2960775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694638529807040