Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2087 248 1e-60 seq1371 237 2e-57 seq2266 84.2 3e-11 >seq2087 Length=2955978 Score = 248 bits (274), Expect = 1e-60 Identities = 597/897 (67%), Gaps = 11/897 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || | ||||| || |||||||| || |||| | || || Sbjct 718713 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 718772 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| |||| || || || ||| |||| |||| | || | | | | Sbjct 718773 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGCACCCGAGCGCAGCCAA 718832 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 |||||| |||||||| || || || ||| |||||| ||||| ||||| || | || Sbjct 718833 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 718892 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || ||||| || || || || | |||||| | || ||| ||| |||||| | ||| Sbjct 718893 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 718952 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCA--AATGTTTAAACATTAAACATGCA 46635 | || | ||| |||| | | | ||| || | || || | ||| ||| Sbjct 718953 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGTA--CAACAGACAAGCA 719010 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 || ||||||||||| ||||| |||| || | ||||| || || || | || ||| Sbjct 719011 AAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCGGC 719070 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA-AAGAATATGCC 46754 ||||| ||||||||||| ||||| || || | || ||| ||| | | ||||| || || Sbjct 719071 ATTAGCCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATCCC 719129 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCT 46814 ||| ||| || || || | | ||||| | | || || || |||||| | Sbjct 719130 TTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGATTCAGCACCATCAATCCAACG 719189 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||||||||||||||| ||||| |||||||| || ||||| || ||| ||| ||| Sbjct 719190 AAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGATG 719249 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 | |||| | | |||||| | ||| || |||| | |||| |||||||| || || Sbjct 719250 GGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAGAGTG 719309 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 |||||||||||| || || || || || || ||| | ||||||| || ||| ||||| Sbjct 719310 AATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGGACCTC 719369 Query 46995 TGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGC 47054 | | |||| | | | | |||||| ||||| || ||| || || || || || Sbjct 719370 TTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGAAGGC 719429 Query 47055 CAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA----GTTTATTCCAGTCATTGA 47110 | | || | || |||| | ||| |||| || | | || | ||||| | | Sbjct 719430 GAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTT-TCCCAGTGACGAA 719488 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 ||||| || | ||| |||||||| || ||||||||||| || || |||||||| |||| Sbjct 719489 CATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGTACA 719548 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTG 47227 | | ||| || | | |||| || || || ||| ||||||| ||| |||| || Sbjct 719549 TTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCTG 719605 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | |||||| ||||| | ||| | || | || ||| || | |||||| Sbjct 1896914 CCTCCTTGGTCAACATATCTTGCAGTATCATTGAACACCCGCAGCATAGGGACAATGCCA 1896973 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| || || |||||||||||| |||||||| || | ||| Sbjct 1896974 TTTGATGTCCCATTAGTACCGCGTATATAACTTCCAGTGGCACGAATGTTGTGCACAGAA 1897033 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || || || | |||||| |||| || ||||| || Sbjct 1897034 ACACCAATACCTCCAGCAGACTTGCTAATAACAGCACACTCCTTCAGAGTATCATAAATT 1897093 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || ||||| || ||||||| | ||| || |||||| Sbjct 1897094 CCTTCAATGCTATCGTCTTTCATGTTGATAAGGAAGCAGCTA 1897135 >seq1371 Length=8752182 Score = 237 bits (262), Expect = 2e-57 Identities = 592/895 (66%), Gaps = 7/895 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || | ||||| || |||||||| || |||| | || || Sbjct 1699892 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 1699951 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| |||| ||||| || ||| |||| |||| | | || | | | | | Sbjct 1699952 CTCCATCCAATCGAACGGGTTCTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCCAA 1700011 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 ||| ||||||||||| || || || ||| |||||| ||||| ||||| || | || Sbjct 1700012 CAGCCTATCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 1700071 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || ||||| || || || || | |||||| | || || ||| |||||| | ||| Sbjct 1700072 CTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTAACTAT 1700131 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCA--AATGTTTAAACATTAAACATGCA 46635 | || | || |||| | | | ||| || | || | | || ||| Sbjct 1700132 CCCCTGCACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGCTGTATAGC--AGGCAGGCA 1700189 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| ||||| ||||| |||| || | ||||| || || || | || ||| Sbjct 1700190 AAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAATCCTGGC 1700249 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || | ||||||||||||||||| || || | |||| |||||| ||||| || ||| Sbjct 1700250 ATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAAATCCCT 1700309 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTT 46815 || ||| || || || | | ||||| | | || || || |||||| | Sbjct 1700310 TCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGATTCAGCACCATCAATCCAACGA 1700369 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 |||||||||||||||| ||||| |||||||| || ||||| || ||| ||| ||| | Sbjct 1700370 AGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGATGG 1700429 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 |||| | | |||||| | || || |||| | |||| |||||||| || ||| Sbjct 1700430 GTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCAGAGTGA 1700489 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||||||||| || || || || || || ||| | ||||||| || ||| ||||| Sbjct 1700490 ATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGAACCTCC 1700549 Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 | |||| | | | | |||||| || || || || || || || || || Sbjct 1700550 TTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAGAAGGCG 1700609 Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAG-TCAGTT--TATTCCAGTCATTGATA 47112 | | || | || |||| | ||| ||||| | | || | | | ||||| | | | Sbjct 1700610 AGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGACGAACA 1700669 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 |||| || | ||| |||||||| || ||||||||||| || || |||||||| ||||| Sbjct 1700670 TCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTTTGTACATT 1700729 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTG 47227 | ||| || | | |||| || || || ||| ||||||| ||| |||| || Sbjct 1700730 TCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCTG 1700784 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 |||||||| || | ||||| ||||| | |||| | || | || ||| || | |||||| Sbjct 2960554 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 2960613 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| || ||| |||||||||||| ||||| || || | ||| Sbjct 2960614 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 2960673 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| |||| || ||||| || Sbjct 2960674 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 2960733 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| ||||||| | ||| || |||||| Sbjct 2960734 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 2960775 >seq2266 Length=5062369 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 |||||||||||| ||||||| |||||| ||||| ||||| || |||||| | ||| Sbjct 3427731 TGAATCCACCTTAAAGCCCAAATAGCCTTCTTCTTAACACAGGGGTTTGTTTTACTTGCA 3427790 Query 46864 TTAAAGAGAAAGtttttttCA--TCACTATCTTTAACATATGTATCTATTAAAAGACTA- 46920 ||| | ||| ||||| | | | || ||| | | || | | |||||| |||| Sbjct 3427791 CGAAAAAAAAATGATTTTTAAGGTTATAATATTTTAAGGAAGTTTTTTTTAAAAAACTAG 3427850 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||| ||| |||||||||| | | || || || || || || || |||||| Sbjct 3427851 TACATTTCAGAACAAATGTTTTCAGTGGGGATTTGGAAGCCATAGAATGCTCGAGCTTCA 3427910 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | ||| |||||| | | |||| ||| | ||||||| ||| ||| Sbjct 3427911 G---CCTGAACCTCTTTCAAGAATCTTTCGGGGCGATTCTCAAGCACAATT 3427958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712903333883520