Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq20 104 5e-17
seq820 100 6e-16
seq46 100 6e-16
seq2056 98.7 2e-15
seq1972 98.7 2e-15
seq1289 98.7 2e-15
seq753 98.7 2e-15
seq319 98.7 2e-15
seq276 98.7 2e-15
seq118 98.7 2e-15
seq68 98.7 2e-15
seq39 98.7 2e-15
seq19 98.7 2e-15
seq12 98.7 2e-15
seq6 98.7 2e-15
>seq20
Length=765589
Score = 104 bits (114), Expect = 5e-17
Identities = 566/887 (64%), Gaps = 26/887 (3%)
Strand=Plus/Plus
Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809
|||| | ||||||||| |||| || | || ||||| |||||||| || || | ||
Sbjct 521588 TTCTGTATGTTCCCAATTGAATACCCACAAATCTGGGAAATGTACAAAAAAGCTGAAGCT 521647
Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAGA 229867
| |||||||| | || ||||| ||| |||| || || |||| ||||| | |
Sbjct 521648 TCATTCTGGACTGCCGAAGAAGTCGATCTTT-CGCAAGATGTTCGTC-ACTGG-GAAACC 521704
Query 229868 AACTCAATGAC-GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCC 229926
| || || || ||||||| |||||||||| |||||||| | || ||||| | ||
Sbjct 521705 ATCTTAACCACCGACGAACAGCATTTCATCACCCACATCCTCGCCTTCTTCGCCGCATCA 521764
Query 229927 GATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAG 229984
|| || || || | || ||||| || | || || || ||| || |||| | |
Sbjct 521765 GACGGCATCGTTCTCGAGAATCTCGCCGG--AAGATTCATGAAGGAGGTTCAGGTTGCTG 521822
Query 229985 AGGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATG 230044
| || || || |||| | ||||| || ||| || || |||||| ||
Sbjct 521823 AAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACT 521882
Query 230045 CTCTGCTTATCGACGCGCTTATTTCCGA----CGAGCAAGAACGGAACGAGCTTTTTGAT 230100
|||| ||| | || | ||| || | | | | || || | | |||||| |
Sbjct 521883 CTCTTCTTTTAGAAAC--TTACATCAAAGATTCTAACCTTAA--GACCCATCTTTTTCGT 521938
Query 230101 GCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160
|| ||||||| ||||| ||| | || |||||| | ||||||| ||| | ||
Sbjct 521939 GCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGAT 521998
Query 230161 CCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220
|| | |||||||||| ||| | | | || | | ||||||||||| ||| | ||
Sbjct 521999 GGTGCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTC 522058
Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTG---ATGCCTGGCCTC 230277
|| || ||||||||| ||||||| ||||| || || ||| | ||||| || |
Sbjct 522059 TCTGGAAGTTTCTGCTCCATCTTCTGGCTC---AAAAAGCGTGGGTTAATGCCGGGTTTA 522115
Query 230278 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT 230337
| || |||||| | || || ||||| || || || | || | | ||
Sbjct 522116 ACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTG 522175
Query 230338 ATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAA 230397
| || || |||| ||||| | |||| ||| | || | | ||
Sbjct 522176 CTATACAGCTTACTGAAGAAGAAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTAAAGGAT 522235
Query 230398 GCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCTTATTGGCAT 230456
||||| |||| ||| |||||| | || || |||| || || | |||| ||
Sbjct 522236 GCAGTCGAAATCGAGCGAGAGTTCGTAACCGATGCGCTTCCGGTGAAGC-TGGTTGGGAT 522294
Query 230457 GAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT 230516
|||| ||| || ||| | |||||||| || || || || ||| | | || | ||||||
Sbjct 522295 GAACTGTGAGCTGATGAGCCAGTACATTGAGTTTGTTGCAGACAGGCTGTTGGCTGCACT 522354
Query 230517 TGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCT 230576
||| | || || || ||| | ||||||| || | | |||||| | || || ||
Sbjct 522355 TGGGTGTGAAAAGGTTTACGGAGTTCAGAACCCGTTCGATTGGATGGAGTTGATCTCTCT 522414
Query 230577 TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623
|||||||||||| || ||||| || ||| | || | || |||||||
Sbjct 522415 TCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGA 522461
>seq820
Length=147821
Score = 100 bits (110), Expect = 6e-16
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758
|||| | || |||||||||||||||| |||||||||| || || |||| || |||||||
Sbjct 38531 TTAACAAGCAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 38590
Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781
||||||||||||||||| |||||
Sbjct 38591 TGGGTTCGAGCCCCACGGTGGGC 38613
>seq46
Length=563220
Score = 100 bits (110), Expect = 6e-16
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758
|||| | || |||||||||||||||| |||||||||| || || |||| || |||||||
Sbjct 174878 TTAACAAGCAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 174819
Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781
||||||||||||||||| |||||
Sbjct 174818 TGGGTTCGAGCCCCACGGTGGGC 174796
>seq2056
Length=75491
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 44362 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 44303
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 44302 CCCACGGTGGGC 44291
>seq1972
Length=81513
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 53139 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 53198
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 53199 CCCACGGTGGGC 53210
>seq1289
Length=110676
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 16318 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16259
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 16258 CCCACGGTGGGC 16247
>seq753
Length=138534
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 39267 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 39208
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 39207 CCCACGGTGGGC 39196
>seq319
Length=213347
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 22716 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22657
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 22656 CCCACGGTGGGC 22645
>seq276
Length=234858
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 222524 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 222465
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 222464 CCCACGGTGGGC 222453
>seq118
Length=362810
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 338341 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 338400
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 338401 CCCACGGTGGGC 338412
>seq68
Length=462779
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 93016 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 93075
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 93076 CCCACGGTGGGC 93087
>seq39
Length=612924
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 239774 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 239715
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 239714 CCCACGGTGGGC 239703
>seq19
Length=890415
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 586941 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 587000
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 587001 CCCACGGTGGGC 587012
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 594465 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 594524
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 594525 CCCACGGTGGGC 594536
>seq12
Length=966905
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 350794 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 350853
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 350854 CCCACGGTGGGC 350865
>seq6
Length=1196388
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 764349 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 764290
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 764289 CCCACGGTGGGC 764278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057672229362740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |