Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq20 104 5e-17 seq820 100 6e-16 seq46 100 6e-16 seq2056 98.7 2e-15 seq1972 98.7 2e-15 seq1289 98.7 2e-15 seq753 98.7 2e-15 seq319 98.7 2e-15 seq276 98.7 2e-15 seq118 98.7 2e-15 seq68 98.7 2e-15 seq39 98.7 2e-15 seq19 98.7 2e-15 seq12 98.7 2e-15 seq6 98.7 2e-15 >seq20 Length=765589 Score = 104 bits (114), Expect = 5e-17 Identities = 566/887 (64%), Gaps = 26/887 (3%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||| |||| || | || ||||| |||||||| || || | || Sbjct 521588 TTCTGTATGTTCCCAATTGAATACCCACAAATCTGGGAAATGTACAAAAAAGCTGAAGCT 521647 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGT-CGTCGACTGGCGTGAGA 229867 | |||||||| | || ||||| ||| |||| || || |||| ||||| | | Sbjct 521648 TCATTCTGGACTGCCGAAGAAGTCGATCTTT-CGCAAGATGTTCGTC-ACTGG-GAAACC 521704 Query 229868 AACTCAATGAC-GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCC 229926 | || || || ||||||| |||||||||| |||||||| | || ||||| | || Sbjct 521705 ATCTTAACCACCGACGAACAGCATTTCATCACCCACATCCTCGCCTTCTTCGCCGCATCA 521764 Query 229927 GATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAG 229984 || || || || | || ||||| || | || || || ||| || |||| | | Sbjct 521765 GACGGCATCGTTCTCGAGAATCTCGCCGG--AAGATTCATGAAGGAGGTTCAGGTTGCTG 521822 Query 229985 AGGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATG 230044 | || || || |||| | ||||| || ||| || || |||||| || Sbjct 521823 AAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACT 521882 Query 230045 CTCTGCTTATCGACGCGCTTATTTCCGA----CGAGCAAGAACGGAACGAGCTTTTTGAT 230100 |||| ||| | || | ||| || | | | | || || | | |||||| | Sbjct 521883 CTCTTCTTTTAGAAAC--TTACATCAAAGATTCTAACCTTAA--GACCCATCTTTTTCGT 521938 Query 230101 GCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160 || ||||||| ||||| ||| | || |||||| | ||||||| ||| | || Sbjct 521939 GCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGAT 521998 Query 230161 CCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220 || | |||||||||| ||| | | | || | | ||||||||||| ||| | || Sbjct 521999 GGTGCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTC 522058 Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTG---ATGCCTGGCCTC 230277 || || ||||||||| ||||||| ||||| || || ||| | ||||| || | Sbjct 522059 TCTGGAAGTTTCTGCTCCATCTTCTGGCTC---AAAAAGCGTGGGTTAATGCCGGGTTTA 522115 Query 230278 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT 230337 | || |||||| | || || ||||| || || || | || | | || Sbjct 522116 ACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTG 522175 Query 230338 ATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAA 230397 | || || |||| ||||| | |||| ||| | || | | || Sbjct 522176 CTATACAGCTTACTGAAGAAGAAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTAAAGGAT 522235 Query 230398 GCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCTTATTGGCAT 230456 ||||| |||| ||| |||||| | || || |||| || || | |||| || Sbjct 522236 GCAGTCGAAATCGAGCGAGAGTTCGTAACCGATGCGCTTCCGGTGAAGC-TGGTTGGGAT 522294 Query 230457 GAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT 230516 |||| ||| || ||| | |||||||| || || || || ||| | | || | |||||| Sbjct 522295 GAACTGTGAGCTGATGAGCCAGTACATTGAGTTTGTTGCAGACAGGCTGTTGGCTGCACT 522354 Query 230517 TGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCT 230576 ||| | || || || ||| | ||||||| || | | |||||| | || || || Sbjct 522355 TGGGTGTGAAAAGGTTTACGGAGTTCAGAACCCGTTCGATTGGATGGAGTTGATCTCTCT 522414 Query 230577 TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| || ||||| || ||| | || | || ||||||| Sbjct 522415 TCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGA 522461 >seq820 Length=147821 Score = 100 bits (110), Expect = 6e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||| | || |||||||||||||||| |||||||||| || || |||| || ||||||| Sbjct 38531 TTAACAAGCAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 38590 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 38591 TGGGTTCGAGCCCCACGGTGGGC 38613 >seq46 Length=563220 Score = 100 bits (110), Expect = 6e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||| | || |||||||||||||||| |||||||||| || || |||| || ||||||| Sbjct 174878 TTAACAAGCAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 174819 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 174818 TGGGTTCGAGCCCCACGGTGGGC 174796 >seq2056 Length=75491 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 44362 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 44303 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 44302 CCCACGGTGGGC 44291 >seq1972 Length=81513 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 53139 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 53198 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 53199 CCCACGGTGGGC 53210 >seq1289 Length=110676 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16318 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16259 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16258 CCCACGGTGGGC 16247 >seq753 Length=138534 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 39267 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 39208 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 39207 CCCACGGTGGGC 39196 >seq319 Length=213347 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 22716 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22657 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22656 CCCACGGTGGGC 22645 >seq276 Length=234858 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 222524 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 222465 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 222464 CCCACGGTGGGC 222453 >seq118 Length=362810 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 338341 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 338400 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 338401 CCCACGGTGGGC 338412 >seq68 Length=462779 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 93016 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 93075 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 93076 CCCACGGTGGGC 93087 >seq39 Length=612924 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 239774 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 239715 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 239714 CCCACGGTGGGC 239703 >seq19 Length=890415 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 586941 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 587000 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 587001 CCCACGGTGGGC 587012 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 594465 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 594524 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 594525 CCCACGGTGGGC 594536 >seq12 Length=966905 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 350794 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 350853 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 350854 CCCACGGTGGGC 350865 >seq6 Length=1196388 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 764349 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 764290 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 764289 CCCACGGTGGGC 764278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057672229362740