Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq20 102 8e-17 >seq20 Length=765589 Score = 102 bits (112), Expect = 8e-17 Identities = 208/303 (69%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTT 17315 ||||||||| ||||| ||||| || ||||| || || || || || ||||| || |||| Sbjct 521881 GTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCG-CGAGCTT 521823 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | || | ||||| ||| ||||| | | || ||||| ||| ||||||||||| Sbjct 521822 CAGCAACCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTG 521763 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG--TAAGAAC 17433 |||||||| || || | || || | ||||||| | ||||| ||||| ||||| Sbjct 521762 ATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGT-CGGTGGTTAAGATG 521704 Query 17434 G--CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 | ||||| | ||||| || | ||| |||||||||| ||||| || ||| Sbjct 521703 GTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCT 521644 Query 17492 ACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTA 17551 | || ||||| ||||| | ||| || | ||||| || ||||| | | ||||| Sbjct 521643 TCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTA 521584 Query 17552 TCT 17554 ||| Sbjct 521583 TCT 521581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517473156554640