Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20 205 1e-47 >seq20 Length=765589 Score = 205 bits (226), Expect = 1e-47 Identities = 421/619 (68%), Gaps = 13/619 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || ||||| ||||| || || ||||||| || | ||||| || || || | Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||||| ||||||||||| ||||| || ||||| ||| || |||||| ||||| Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCCAGAGAAGAA 522053 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCAT 24309 ||| ||||| || ||||| ||||| | || || || ||| | || | ||| Sbjct 522052 AATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCA-AACGATTCAGCACCATCA- 521995 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| |||||||||| |||||||| || |||||||| || || || || ||| Sbjct 521994 --ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 521937 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 ||| |||| | | || ||| |||||| | || || || | | |||| |||| Sbjct 521936 GAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACA 521877 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 |||| || ||||||||||||||||| ||||| || || |||||| | ||| || | || Sbjct 521876 TTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 521817 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 ||| || || | |||| | | || | ||| || || || ||||| || | Sbjct 521816 CCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGG 521757 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT--TATTCC 24606 | || || || | | || | || |||| | |||||| | ||| || | | | || Sbjct 521756 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCC 521697 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | | ||||| || | ||| |||||||| | ||||| ||||| || || || | Sbjct 521696 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 521637 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 24726 |||| ||||| | |||||| | | |||| |||||| || ||| ||||||| ||| | Sbjct 521636 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGT 521577 Query 24727 TTTTTGCAAGGATTGGTTC 24745 ||| || || | ||| || Sbjct 521576 TTTCTGTGAGAAGTGGGTC 521558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593638493819040