Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq51 123 2e-23 seq1360 105 6e-18 seq6 105 6e-18 seq319 104 2e-17 seq355 100 2e-16 >seq51 Length=574565 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||||| ||| |||||||| |||||||||||||| || || || || | || Sbjct 463923 GAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATC 463864 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| ||||| || || ||| ||||||| |||||||||||| || | ||||| || || Sbjct 463863 CTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATC 463804 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | | || ||| | || ||||| ||| || || Sbjct 463803 CTGGATCTTCGTCTTCACATTCTCAATGGTGTCAGAAGTTTCGACTTCCAAGGTGATCGT 463744 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| |||| || |||||||| || ||||| Sbjct 463743 CTTGCCTGTTAGGGTCTTGACAAAGATCTGCAT 463711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | ||| || | ||| | || ||||||||||||||||| || || ||| Sbjct 464621 CCCCCACGAAGACGGAGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCC 464562 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| | | ||||||| || || || ||| | || || ||||||||||| ||| Sbjct 464561 AAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 464502 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | | |||||| | ||| Sbjct 464501 ATACCCTCCTTGTCCTGAATCTTAGTCTTCACATTCTCAATTGTATCAGAAGTCTCAACC 464442 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| ||||| | || || ||||| || ||||| Sbjct 464441 TCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 464395 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| || | || | ||||||||||||||| ||||| ||||| || | Sbjct 463706 CCCCTC--AGACGGAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTA 463649 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | ||| | | || |||| ||| || || || | || || |||||||||||| || | Sbjct 463648 GAGTTCTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGA 463589 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 || ||||| || || ||| || || || | | | ||| ||| | |||| Sbjct 463588 TACCCTCCTTATC-CTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACC 463530 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | ||||| ||||| |||||||| Sbjct 463529 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 463483 >seq1360 Length=99280 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| || ||||| ||||| || || || || |||| Sbjct 35105 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCT 35164 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || || | || || | ||||||||| ||| | |||||||||||| Sbjct 35165 TCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 35224 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | ||| || || || || || | ||| ||||| Sbjct 35225 TGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTT 35284 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || ||||||| ||||| || ||||| ||||| || || Sbjct 35285 TTCCCGGTTAGGGTTTTCACGAATATCTGCATCTTCAA 35322 >seq6 Length=1196388 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||||||| || | ||| |||||||| || ||||||||||| | Sbjct 29930 TTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTG 29989 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | |||||| || | ||||| |||||||| || ||| | || || | |||||| || || Sbjct 29990 CAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGG 30049 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCC 21125 | | ||||| || || || ||| || ||||| | | | |||||| ||| Sbjct 30050 GAATTCCTTCTTTATC-TTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCG 30108 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||| |||||| |||| ||||||||||| |||||||| Sbjct 30109 ACCTCAAGAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || ||||| || ||||| |||| ||| | | ||||| || || || || Sbjct 28366 GTGGATTCTTTCTGAATATTGTAGTCAGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCT 28425 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || ||||||||||||||| ||| | || ||||| || ||| || |||| Sbjct 28426 GCAAAGATTAGTCTCTGCTGGTCCGGGGGAATCCCCTCCTTATCCTGGATTTTAGTTTTC 28485 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | |||||||||| | ||| |||| ||| |||||||| || || || || Sbjct 28486 ACATTATCGACAGTATCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTC 28545 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 28546 TTGACAAAAATCTGCAT 28562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || ||||||||||| || || || ||||| ||||| | || Sbjct 28807 AGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCA 28866 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || | || ||||||||| || | |||||||||||| Sbjct 28867 TCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 28926 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||| || | | | ||| ||| | ||| |||| || |||||| Sbjct 28927 TGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATGGTC 28986 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || || || || ||||| ||||||||| Sbjct 28987 TTCCCTGTCAAAGTCTTAACAAAAATTTGCATT 29019 >seq319 Length=213347 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | |||||| | || | ||| ||||||||||||||||| ||||| | Sbjct 180314 TTCCTCCCCTGAGACGGAGCACAAGGTGAAGAGTTGACTCCTTTTGAATGTTGTAGTCAG 180255 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | |||||| || ||||||| |||||||| || || | || || || |||||||| || Sbjct 180254 CTAGGGTTCGGCCGTCCTCTAGCTGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGG 180195 Query 21067 GCACGCCTTCCTTGTCGGCGATCTT 21091 | | ||||||||||| |||||| Sbjct 180194 GAATCCCTTCCTTGTCTTGGATCTT 180170 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | |||||||| ||| | |||||||||||| || ||||| ||||| | Sbjct 180998 TTCCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 180939 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || || | ||||| ||||| || || || |||| | ||||||||||| || Sbjct 180938 CCAAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGG 180879 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| || || | | | | || || | ||| Sbjct 180878 GGATACCTTCCTTGTCCTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAA 180819 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||||| || || | || ||||| ||||| ||||| Sbjct 180818 CCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | |||||| | || | |||||||||||| || ||||| ||||| | Sbjct 180542 TTCCTCCCCTAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 180483 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | |||||| || | ||||| ||||| || || ||| | || || || |||||||| || Sbjct 180482 CGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGG 180423 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| || || || || | | | | || || | || Sbjct 180422 GGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGA 180363 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | ||| || ||||| || |||| ||||||||||| || |||||| Sbjct 180362 CTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCATT 180313 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || |||||||| || ||||| ||||| || Sbjct 180768 CCACCACGAAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 180709 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| || || || | || | ||||||||||| ||| Sbjct 180708 AGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 180649 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | | | ||||| | ||| | Sbjct 180648 ATACCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACT 180589 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | |||||||||||| || || | || || ||||| ||||||||| Sbjct 180588 TCAAGGGTAATGGTCTTCCCTGTGAGAGTCTTCACAAAGATTTGCATT 180541 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| |||||||| || || || ||||| | | ||||| ||||| || || Sbjct 181422 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCA 181363 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||||||||||| ||| | || |||||||| |||||| ||| Sbjct 181362 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTC 181303 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||| || | ||| |||| || ||||||||||| || || || Sbjct 181302 ACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTC 181243 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| || |||||| Sbjct 181242 TTCACAAAAATCTGCATT 181225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | |||||||| || | || |||||||| || || || || |||| Sbjct 181226 TTCCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCG 181167 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || | || |||||||| || || ||| |||| | ||||||||||| || Sbjct 181166 CAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 181107 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| ||||| || || | | | | || || | ||| Sbjct 181106 GGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAA 181047 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| |||||||| ||||| || || ||||| || || |||||| Sbjct 181046 CCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 180997 >seq355 Length=215899 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| |||||||| ||||| |||| || | | ||||||| ||| || || Sbjct 205492 GTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCATCCTCCAACTGCTTACCA 205433 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | ||||||||||| || | ||||||||||| ||||| || Sbjct 205432 GCAAAAATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTG 205373 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | ||| |||| ||| ||||| || || || || ||| Sbjct 205372 ACATTATCGATAGTATCTGAGCTCTCAACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTT 205313 Query 21159 TTGACAAATATTTGCATT 21176 || ||||||||||||||| Sbjct 205312 TTAACAAATATTTGCATT 205295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422201571911768