Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq51 123 2e-23
seq1360 105 6e-18
seq6 105 6e-18
seq319 104 2e-17
seq355 100 2e-16
>seq51
Length=574565
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022
||| |||| ||||| ||| |||||||| |||||||||||||| || || || || | ||
Sbjct 463923 GAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATC 463864
Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082
||| ||||| || || ||| ||||||| |||||||||||| || | ||||| || ||
Sbjct 463863 CTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATC 463804
Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142
|||||| ||||| | | | || ||| | || ||||| ||| || ||
Sbjct 463803 CTGGATCTTCGTCTTCACATTCTCAATGGTGTCAGAAGTTTCGACTTCCAAGGTGATCGT 463744
Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||| |||| || |||||||| || |||||
Sbjct 463743 CTTGCCTGTTAGGGTCTTGACAAAGATCTGCAT 463711
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
||||| || || | ||| || | ||| | || ||||||||||||||||| || || |||
Sbjct 464621 CCCCCACGAAGACGGAGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCC 464562
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| |||| | | ||||||| || || || ||| | || || ||||||||||| |||
Sbjct 464561 AAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 464502
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||| ||||| | | | |||||| | |||
Sbjct 464501 ATACCCTCCTTGTCCTGAATCTTAGTCTTCACATTCTCAATTGTATCAGAAGTCTCAACC 464442
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || ||||| ||||| | || || ||||| || |||||
Sbjct 464441 TCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 464395
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| || | || | ||||||||||||||| ||||| ||||| || |
Sbjct 463706 CCCCTC--AGACGGAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTA 463649
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
| ||| | | || |||| ||| || || || | || || |||||||||||| || |
Sbjct 463648 GAGTTCTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGA 463589
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
|| ||||| || || ||| || || || | | | ||| ||| | ||||
Sbjct 463588 TACCCTCCTTATC-CTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACC 463530
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||||||||||| || | ||||| ||||| ||||||||
Sbjct 463529 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 463483
>seq1360
Length=99280
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| || | || |||||||| || ||||| ||||| || || || || ||||
Sbjct 35105 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCT 35164
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| |||||||| || || | || || | ||||||||| ||| | ||||||||||||
Sbjct 35165 TCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 35224
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | ||| || || || || || | ||| |||||
Sbjct 35225 TGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTT 35284
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181
|| ||||||| ||||| || ||||| ||||| || ||
Sbjct 35285 TTCCCGGTTAGGGTTTTCACGAATATCTGCATCTTCAA 35322
>seq6
Length=1196388
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || || || | ||||||| || | ||| |||||||| || ||||||||||| |
Sbjct 29930 TTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTG 29989
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
| |||||| || | ||||| |||||||| || ||| | || || | |||||| || ||
Sbjct 29990 CAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGG 30049
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCC 21125
| | ||||| || || || ||| || ||||| | | | |||||| |||
Sbjct 30050 GAATTCCTTCTTTATC-TTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCG 30108
Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || |||| |||||| |||| ||||||||||| ||||||||
Sbjct 30109 ACCTCAAGAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||| || || ||||| || ||||| |||| ||| | | ||||| || || || ||
Sbjct 28366 GTGGATTCTTTCTGAATATTGTAGTCAGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCT 28425
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || ||||||||||||||| ||| | || ||||| || ||| || ||||
Sbjct 28426 GCAAAGATTAGTCTCTGCTGGTCCGGGGGAATCCCCTCCTTATCCTGGATTTTAGTTTTC 28485
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | |||||||||| | ||| |||| ||| |||||||| || || || ||
Sbjct 28486 ACATTATCGACAGTATCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTC 28545
Query 21159 TTGACAAATATTTGCAT 21175
|||||||| || |||||
Sbjct 28546 TTGACAAAAATCTGCAT 28562
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| || | || ||||||||||| || || || ||||| ||||| | ||
Sbjct 28807 AGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCA 28866
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| || || ||| | || | || ||||||||| || | ||||||||||||
Sbjct 28867 TCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 28926
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| ||| || | | | ||| ||| | ||| |||| || ||||||
Sbjct 28927 TGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATGGTC 28986
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|| || || || || || ||||| |||||||||
Sbjct 28987 TTCCCTGTCAAAGTCTTAACAAAAATTTGCATT 29019
>seq319
Length=213347
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || | || | |||||| | || | ||| ||||||||||||||||| ||||| |
Sbjct 180314 TTCCTCCCCTGAGACGGAGCACAAGGTGAAGAGTTGACTCCTTTTGAATGTTGTAGTCAG 180255
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
| |||||| || ||||||| |||||||| || || | || || || |||||||| ||
Sbjct 180254 CTAGGGTTCGGCCGTCCTCTAGCTGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGG 180195
Query 21067 GCACGCCTTCCTTGTCGGCGATCTT 21091
| | ||||||||||| ||||||
Sbjct 180194 GAATCCCTTCCTTGTCTTGGATCTT 180170
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || | || | |||||||| ||| | |||||||||||| || ||||| ||||| |
Sbjct 180998 TTCCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 180939
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
||| || || | ||||| ||||| || || || |||| | ||||||||||| ||
Sbjct 180938 CCAAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGG 180879
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | ||||||||||| ||||| || || | | | | || || | |||
Sbjct 180878 GGATACCTTCCTTGTCCTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAA 180819
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||||||||||| || || | || ||||| ||||| |||||
Sbjct 180818 CCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || | || | |||||| | || | |||||||||||| || ||||| ||||| |
Sbjct 180542 TTCCTCCCCTAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 180483
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
| |||||| || | ||||| ||||| || || ||| | || || || |||||||| ||
Sbjct 180482 CGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGG 180423
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | ||||||||||| || || || || | | | | || || | ||
Sbjct 180422 GGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGA 180363
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||| | ||| || ||||| || |||| ||||||||||| || ||||||
Sbjct 180362 CTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCATT 180313
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||||| || | || |||||||| || ||||| ||||| ||
Sbjct 180768 CCACCACGAAGACGGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 180709
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||| ||||| || || || | || | ||||||||||| |||
Sbjct 180708 AGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 180649
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||| || || | | | | ||||| | ||| |
Sbjct 180648 ATACCCTCCTTGTCTTGAATCTTAGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACT 180589
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|| | |||||||||||| || || | || || ||||| |||||||||
Sbjct 180588 TCAAGGGTAATGGTCTTCCCTGTGAGAGTCTTCACAAAGATTTGCATT 180541
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| |||||||| || || || ||||| | | ||||| ||||| || ||
Sbjct 181422 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCA 181363
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | ||||||||||| ||| | || |||||||| |||||| |||
Sbjct 181362 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTC 181303
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | ||| || | ||| |||| || ||||||||||| || || ||
Sbjct 181302 ACATTATCAATAGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTC 181243
Query 21159 TTGACAAATATTTGCATT 21176
|| ||||| || ||||||
Sbjct 181242 TTCACAAAAATCTGCATT 181225
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || | || | |||||||| || | || |||||||| || || || || ||||
Sbjct 181226 TTCCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCG 181167
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
| || || | || |||||||| || || ||| |||| | ||||||||||| ||
Sbjct 181166 CAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 181107
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | |||||||||||| ||||| || || | | | | || || | |||
Sbjct 181106 GGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAA 181047
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|| | ||| |||||||| ||||| || || ||||| || || ||||||
Sbjct 181046 CCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 180997
>seq355
Length=215899
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||| ||||| |||||||| ||||| |||| || | | ||||||| ||| || ||
Sbjct 205492 GTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCATCCTCCAACTGCTTACCA 205433
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| |||| | ||||||||||| || | ||||||||||| ||||| ||
Sbjct 205432 GCAAAAATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTG 205373
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| |||||| | ||| |||| ||| ||||| || || || || |||
Sbjct 205372 ACATTATCGATAGTATCTGAGCTCTCAACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTT 205313
Query 21159 TTGACAAATATTTGCATT 21176
|| |||||||||||||||
Sbjct 205312 TTAACAAATATTTGCATT 205295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422201571911768
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