Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq51 127 3e-24 seq6 113 7e-20 seq355 105 1e-17 seq338 87.8 3e-12 >seq51 Length=574565 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||||||||| || || || | || | ||| | | Sbjct 463711 ATGCAGATCTTTGTCAAGACCCTAACAGGCAAGACGATCACCTTGGAAGTCGAAACTTCT 463770 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||| || || ||||||||||| || ||||| || || Sbjct 463771 GACACCATTGAGAATGTGAAGACGAAGATCCAGGATAAAGAAGGGATCCCACCGGACCAG 463830 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| || || || | |||||| | || || | | ||| ||||| Sbjct 463831 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 463890 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || ||| |||||||||| | ||||| | || ||||| Sbjct 463891 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTCCGTTTGAGGGGAGGTAT 463940 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || || | ||||| || || || ||||| || || |||| ||||| || | Sbjct 464167 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 464226 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || ||| ||||||||||| || || || |||||||| || Sbjct 464227 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 464285 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| |||| ||||| || || || | |||||| | | || || | ||||| || Sbjct 464286 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 464345 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| |||||||| |||| ||||| | || | |||||||||| Sbjct 464346 CATCCAAAAGGAATCAACCCTGCACTTGGTCCTCCGCCTCAGAGGTGGTAT 464396 >seq6 Length=1196388 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||| ||||| | |||||| | ||| | || | Sbjct 30158 ATGCAAATTTTTGTCAAAACCCTAACTGGCAAGTCCATAACTCTTGAGGTCGAGAGTTCT 30099 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | || |||||||||||||||||||| || || || ||||| Sbjct 30098 GATACGATTGATAATGTGAAGACCAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 30039 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | |||||| | ||||| | | ||| ||||| Sbjct 30038 CAGCGTCTGATCTTTGCTGGTAAACAGCTCGAGGATGGCCGAACCCTTGCAGACTATAAC 29979 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| | || ||||| | || | || ||||| || Sbjct 29978 ATCCAGAAGGAGTCTACTCTCCACTTGGTGCTTCGCCTTCGTGGTGGAAT 29929 Score = 104 bits (114), Expect = 4e-17 Identities = 170/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || ||||||| || ||||| ||| | ||| |||| ||| Sbjct 29246 ATGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCC 29187 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| |||| || ||||||||||| || || || || || || |||| Sbjct 29186 -GACACTATTGACAATGTTAAGACC-AAAATTCAAGACAAGGAGGGAATCCCCCCAGATC 29129 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | || ||||| || || || | |||||| | || || | | ||||| | Sbjct 29128 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACA 29069 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||| || || || ||||| | ||| | ||| | || ||| ||||||| || ||| || Sbjct 29068 ATATCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGGAATGCAAATTT 29009 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | ||||| || || || ||| | ||| |||| ||| Sbjct 29474 ATGCAAATTTTTGTGAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 29415 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| |||| || ||||||||||| || || || || || || |||| Sbjct 29414 -GACACTATTGACAATGTTAAGACC-AAAATTCAAGACAAGGAGGGAATCCCCCCAGATC 29357 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | || ||||| || || || | |||||| | || || | | ||||| | Sbjct 29356 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACA 29297 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||| || || |||||||| | ||| | || | || ||| | || ||||| ||| || Sbjct 29296 ATATCCAGAAGGAATCAACCCTCCATCTTGTGCTCCGATTAAGGGGAGGTATGCAAATTT 29237 >seq355 Length=215899 Score = 105 bits (116), Expect = 1e-17 Identities = 168/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || || || | ||| ||||| Sbjct 204840 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACAATCACCCTTGAGGTTGAAAGCTCC 204899 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||||||||||| ||||| || || ||||| ||| Sbjct 204900 GACACCATTGACAATGTCAAAACCAAAATTCAAGATAAGGAAGGCATTCCCCCTGACCAA 204959 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || ||||| ||||| || | |||||| | || || | | ||||| | Sbjct 204960 CAGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACCCTTGCTGATTACACC 205019 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||||| || || ||||| | ||| | || | |||||| ||||||| || ||| |||| Sbjct 205020 ATTCAGAAGGAGTCAACGCTCCATCTTGTACTCCGTTTAAGAGGTGGAATGCAAATATTC 205079 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| |||||| | ||| |||| | Sbjct 204156 ATGCAAATCTTTGTTAAGACTCTTACCGGAAAAACCATAACTCTCGAGGTTGAGAGTTTT 204215 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| |||| || ||| ||||||||||| || || || || || || || Sbjct 204216 GACACCATCGACAATGTTAAGAC-GAAGATTCAAGATAAGGAGGGAATTCCCCCAGACCA 204274 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| ||||| || | |||||| | |||| | | || || || Sbjct 204275 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCAGAACGCTCGCTGACTACAA 204334 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| |||||||| || | || | ||| | ||| | |||| || || Sbjct 204335 TATTCAGAAAGAATCGACCCTCCACCTTGTTCTCCGTCTTAGAGGGGGGAT 204385 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | || || | || || ||||| || || | ||| |||| ||| Sbjct 205295 AATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTC 205354 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||| || |||| | || || || || || || ||||| || ||||| || | Sbjct 205355 A-GATACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCACCAGACC 205413 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | |||||||| || || || || |||||| | || || || | ||| || | Sbjct 205414 AGCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACA 205473 Query 124717 ATATTCAAAAAGAATCAAC 124735 | ||||| || ||||| || Sbjct 205474 ACATTCAGAAGGAATCCAC 205492 Score = 87.8 bits (96), Expect = 3e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||||||||| | ||||| | || || || || || ||| | ||| | || || Sbjct 205067 AATGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTC 205126 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || ||| ||| | || || ||||||||||| || || || || || |||| Sbjct 205127 A-GACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATC 205185 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | || |||||||| || || | |||||| | | || | | || || | Sbjct 205186 AGCAAAGGTTAATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACA 205245 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| ||||| || || || | || ||||| | |||||| |||| || || Sbjct 205246 ATATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGAAT 205297 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || ||||| || | || |||| | Sbjct 204384 ATGCAGATTTTTGTTAAGACCCTCACCGGGAAGACTATCACCCTTGAAGTTGAGAGTTCT 204443 Query 124599 GATACAATTTCTAATTT-AAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | |||||| ||||||||||| || |||||||| || || || || Sbjct 204444 GACACTATTGATAACGTCAAAACA-AAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 204502 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| ||||| || | || ||| | || || | | ||||| || Sbjct 204503 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 204562 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || | ||| | ||| || ||||||| || Sbjct 204563 CATCCAGAAGGAGTCGACACTCCACCTTGTTCTCCGTCTAAGAGGTGGCAT 204613 >seq338 Length=211836 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || || || || || ||||| || || | ||| ||||| | | Sbjct 171489 AATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAATCTAG 171430 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | || |||||||| || |||||||| || | ||| ||||| Sbjct 171429 TGACACCATCAACAATGTCAAGGCTAAAATTCATGACAAAGAAGGCATTCAACCCGATCA 171370 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || ||||| ||| | || || | || || ||| ||||| || Sbjct 171369 ACAGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGACAACCGTACTCTAGCCGATTACAA 171310 Query 124718 TATTCAAAAAG 124728 || || |||| Sbjct 171309 CATCCAGAAAG 171299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755350255046400