Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq51 127 3e-24
seq6 113 7e-20
seq355 105 1e-17
seq338 87.8 3e-12
>seq51
Length=574565
Score = 127 bits (140), Expect = 3e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| ||||||||||| || || || | || | ||| | |
Sbjct 463711 ATGCAGATCTTTGTCAAGACCCTAACAGGCAAGACGATCACCTTGGAAGTCGAAACTTCT 463770
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || ||| || || ||||||||||| || ||||| || ||
Sbjct 463771 GACACCATTGAGAATGTGAAGACGAAGATCCAGGATAAAGAAGGGATCCCACCGGACCAG 463830
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| |||||||||||||| || || || | |||||| | || || | | ||| |||||
Sbjct 463831 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 463890
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| || || || ||| |||||||||| | ||||| | || |||||
Sbjct 463891 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTCCGTTTGAGGGGAGGTAT 463940
Score = 116 bits (128), Expect = 6e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597
||||| || || | ||||| || || || ||||| || || |||| ||||| || |
Sbjct 464167 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 464226
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | || ||| ||||||||||| || || || |||||||| ||
Sbjct 464227 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 464285
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||| |||| ||||| || || || | |||||| | | || || | ||||| ||
Sbjct 464286 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 464345
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| |||||||| |||| ||||| | || | ||||||||||
Sbjct 464346 CATCCAAAAGGAATCAACCCTGCACTTGGTCCTCCGCCTCAGAGGTGGTAT 464396
>seq6
Length=1196388
Score = 113 bits (124), Expect = 7e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || || ||||| ||||| | |||||| | ||| | || |
Sbjct 30158 ATGCAAATTTTTGTCAAAACCCTAACTGGCAAGTCCATAACTCTTGAGGTCGAGAGTTCT 30099
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| |||| | || |||||||||||||||||||| || || || |||||
Sbjct 30098 GATACGATTGATAATGTGAAGACCAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 30039
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || ||||| || ||||| | |||||| | ||||| | | ||| |||||
Sbjct 30038 CAGCGTCTGATCTTTGCTGGTAAACAGCTCGAGGATGGCCGAACCCTTGCAGACTATAAC 29979
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || ||| | || ||||| | || | || ||||| ||
Sbjct 29978 ATCCAGAAGGAGTCTACTCTCCACTTGGTGCTTCGCCTTCGTGGTGGAAT 29929
Score = 104 bits (114), Expect = 4e-17
Identities = 170/240 (71%), Gaps = 4/240 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| ||| | || || ||||||| || ||||| ||| | ||| |||| |||
Sbjct 29246 ATGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCC 29187
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
|| || ||| ||| |||| || ||||||||||| || || || || || || ||||
Sbjct 29186 -GACACTATTGACAATGTTAAGACC-AAAATTCAAGACAAGGAGGGAATCCCCCCAGATC 29129
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || ||| | || ||||| || || || | |||||| | || || | | ||||| |
Sbjct 29128 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACA 29069
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||| || || || ||||| | ||| | ||| | || ||| ||||||| || ||| ||
Sbjct 29068 ATATCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGGAATGCAAATTT 29009
Score = 95.1 bits (104), Expect = 2e-14
Identities = 168/240 (70%), Gaps = 4/240 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| ||| | ||||| | ||||| || || || ||| | ||| |||| |||
Sbjct 29474 ATGCAAATTTTTGTGAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTCC 29415
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
|| || ||| ||| |||| || ||||||||||| || || || || || || ||||
Sbjct 29414 -GACACTATTGACAATGTTAAGACC-AAAATTCAAGACAAGGAGGGAATCCCCCCAGATC 29357
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || ||| | || ||||| || || || | |||||| | || || | | ||||| |
Sbjct 29356 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACA 29297
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||| || || |||||||| | ||| | || | || ||| | || ||||| ||| ||
Sbjct 29296 ATATCCAGAAGGAATCAACCCTCCATCTTGTGCTCCGATTAAGGGGAGGTATGCAAATTT 29237
>seq355
Length=215899
Score = 105 bits (116), Expect = 1e-17
Identities = 168/240 (70%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || || || || || || | ||| |||||
Sbjct 204840 ATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACAATCACCCTTGAGGTTGAAAGCTCC 204899
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| |||||||||||||| ||||| || || ||||| |||
Sbjct 204900 GACACCATTGACAATGTCAAAACCAAAATTCAAGATAAGGAAGGCATTCCCCCTGACCAA 204959
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || || || ||||| ||||| || | |||||| | || || | | ||||| |
Sbjct 204960 CAGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACCCTTGCTGATTACACC 205019
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777
||||| || || ||||| | ||| | || | |||||| ||||||| || ||| ||||
Sbjct 205020 ATTCAGAAGGAGTCAACGCTCCATCTTGTACTCCGTTTAAGAGGTGGAATGCAAATATTC 205079
Score = 95.1 bits (104), Expect = 2e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| || || || ||||| |||||| | ||| |||| |
Sbjct 204156 ATGCAAATCTTTGTTAAGACTCTTACCGGAAAAACCATAACTCTCGAGGTTGAGAGTTTT 204215
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || ||| |||| || ||| ||||||||||| || || || || || || ||
Sbjct 204216 GACACCATCGACAATGTTAAGAC-GAAGATTCAAGATAAGGAGGGAATTCCCCCAGACCA 204274
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | || || ||||| ||||| || | |||||| | |||| | | || || ||
Sbjct 204275 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCAGAACGCTCGCTGACTACAA 204334
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||| |||||||| || | || | ||| | ||| | |||| || ||
Sbjct 204335 TATTCAGAAAGAATCGACCCTCCACCTTGTTCTCCGTCTTAGAGGGGGGAT 204385
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
||||||||||||| | || || | || || ||||| || || | ||| |||| |||
Sbjct 205295 AATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTC 205354
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
| ||||| || |||| | || || || || || || ||||| || ||||| || |
Sbjct 205355 A-GATACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCACCAGACC 205413
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || ||| | |||||||| || || || || |||||| | || || || | ||| || |
Sbjct 205414 AGCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACA 205473
Query 124717 ATATTCAAAAAGAATCAAC 124735
| ||||| || ||||| ||
Sbjct 205474 ACATTCAGAAGGAATCCAC 205492
Score = 87.8 bits (96), Expect = 3e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
|||||||||||| | ||||| | || || || || || ||| | ||| | || ||
Sbjct 205067 AATGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTC 205126
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
| || || ||| ||| | || || ||||||||||| || || || || || ||||
Sbjct 205127 A-GACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATC 205185
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| |||||| | || |||||||| || || | |||||| | | || | | || || |
Sbjct 205186 AGCAAAGGTTAATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACA 205245
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||| ||||| || || || | || ||||| | |||||| |||| || ||
Sbjct 205246 ATATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGAAT 205297
Score = 86.0 bits (94), Expect = 9e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || || || ||||| || | || |||| |
Sbjct 204384 ATGCAGATTTTTGTTAAGACCCTCACCGGGAAGACTATCACCCTTGAAGTTGAGAGTTCT 204443
Query 124599 GATACAATTTCTAATTT-AAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| ||| | |||||| ||||||||||| || |||||||| || || || ||
Sbjct 204444 GACACTATTGATAACGTCAAAACA-AAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 204502
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||| | || ||||| ||||| || | || ||| | || || | | ||||| ||
Sbjct 204503 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 204562
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || || | || | ||| | ||| || ||||||| ||
Sbjct 204563 CATCCAGAAGGAGTCGACACTCCACCTTGTTCTCCGTCTAAGAGGTGGCAT 204613
>seq338
Length=211836
Score = 87.8 bits (96), Expect = 3e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||||||| | || || || || || ||||| || || | ||| ||||| | |
Sbjct 171489 AATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAATCTAG 171430
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || || ||| | || |||||||| || |||||||| || | ||| |||||
Sbjct 171429 TGACACCATCAACAATGTCAAGGCTAAAATTCATGACAAAGAAGGCATTCAACCCGATCA 171370
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | || || || || ||||| ||| | || || | || || ||| ||||| ||
Sbjct 171369 ACAGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGACAACCGTACTCTAGCCGATTACAA 171310
Query 124718 TATTCAAAAAG 124728
|| || ||||
Sbjct 171309 CATCCAGAAAG 171299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755350255046400
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