Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 1e-15
seq51 84.2 3e-11
>seq6
Length=1196388
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| | ||| | | ||||| || | |||||| || || || ||||| ||||
Sbjct 29930 TTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTG 29989
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||| |||| || ||| || | ||||| |||||||| |||| | |||||||| || |
Sbjct 29990 CAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGG 30049
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||||||||||||||||||
Sbjct 30050 GAATTCCTTCTTTATCTTG 30068
>seq51
Length=574565
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| | |||||| || || || ||||| |||| |||||| | || ||| ||
Sbjct 463919 ACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATCCTCA 463860
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| || || ||||||||||| | || ||||| ||||| || || ||||||||||| ||
Sbjct 463859 AGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCCTG 463801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743422324892160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |