Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 seq51 84.2 3e-11 >seq6 Length=1196388 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | ||||| || | |||||| || || || ||||| |||| Sbjct 29930 TTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTG 29989 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| |||| || ||| || | ||||| |||||||| |||| | |||||||| || | Sbjct 29990 CAAGGGTTCGGCCATCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGG 30049 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 30050 GAATTCCTTCTTTATCTTG 30068 >seq51 Length=574565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||| || || || ||||| |||| |||||| | || ||| || Sbjct 463919 ACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATCCTCA 463860 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || ||||||||||| | || ||||| ||||| || || ||||||||||| || Sbjct 463859 AGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCCTG 463801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743422324892160