Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1360 114 8e-21 seq319 104 2e-17 seq51 104 2e-17 seq1427 95.1 8e-15 seq2834 89.7 3e-13 seq338 86.0 4e-12 >seq1360 Length=99280 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||||| || ||| |||| Sbjct 35105 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCT 35164 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| || || ||||||||||| ||| | || |||||||| Sbjct 35165 TCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 35224 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | |||| || | ||||| || || | || |||||| Sbjct 35225 TGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTT 35284 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || |||||||| || ||||||||| Sbjct 35285 TTCCCGGTTAGGGTTTTCACGAATATCTGCATC 35317 >seq319 Length=213347 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| ||||||||||||| || ||| | || Sbjct 180753 AGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCC 180694 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || | || ||||||||| ||| | | ||||||||| Sbjct 180693 TCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 180634 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||||| ||||| || | || ||||| Sbjct 180633 TGAATCTTAGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCAAGGGTAATGGTC 180574 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||||||| ||||||||||| ||||| Sbjct 180573 TTCCCTGTGAGAGTCTTCACAAAGATTTGCAT 180542 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| || ||||| ||||||||||||| || ||| | || Sbjct 180525 AGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCC 180466 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || ||||||| |||||||| ||| | | |||||||| Sbjct 180465 TCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 180406 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||| | | | | || | |||| |||||| || | ||||| || Sbjct 180405 TGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATTGTC 180346 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || ||||| |||||||||||||| Sbjct 180345 TTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 180314 >seq51 Length=574565 Score = 104 bits (114), Expect = 2e-17 Identities = 156/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG-TC 34236 ||||||||||| |||||| ||| ||||| || ||||| || | || || | || || Sbjct 464150 AGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCCAA-TGTCCTTCCATC 464092 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||||||||| || || || || |||| ||||||||| || | | ||||||||| Sbjct 464091 ATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTC 464032 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTCGACGTCCACCGTGA 34352 |||||| ||| | | |||||| ||| || ||| || |||| |||| Sbjct 464031 CTGAATCTTTGTCTTAACGT----TATCGATAGTGTCAGAGCTTTCAACTTCCAGGGTGA 463976 Query 34353 TGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| || |||||||| ||||| || |||||||| Sbjct 463975 TGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| | || | | | || ||||||||||| || ||||| Sbjct 463673 TCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAG 463614 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 ||||||| ||||||||| || | | |||||| || || ||||| ||| | || Sbjct 463613 ATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATC--CTGAATTTTGGTCTTGACAT 463556 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || || | |||||||| ||||| || || ||||||| Sbjct 463555 TCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCA 463496 Query 34377 CAAAGATCTGCATC 34390 ||||||| |||||| Sbjct 463495 CAAAGATTTGCATC 463482 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||| || | || || | || ||||| ||||| || || || Sbjct 464585 TCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAG 464526 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||||||||| ||| | | ||||||||| ||||| ||| | || Sbjct 464525 ATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACATTC 464466 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || || | ||||| || || |||||||| || |||||| Sbjct 464465 TCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCACA 464406 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 464405 AAGATCTGCAT 464395 >seq1427 Length=108667 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGG--ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 || ||||| ||||||||||||| | || || ||| | || || | ||| || || |||| Sbjct 17791 TCCTTCTGGATGTTGTAGTCGGCTAAAG-TG-CGGCCATCTTCGAGCTGTTTTCCGGCGA 17734 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 | ||||| || || ||||| || | || || ||||| ||||| ||||| | | Sbjct 17733 AGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTG-GCTTTGACA 17675 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | ||||| |||||||| || | || |||||||| || || || |||||| Sbjct 17674 TTGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 17615 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 17614 ACGAAGATCTGCAT 17601 >seq2834 Length=64598 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGG--ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 || ||||| ||||||||||||| | || || ||| | || || | ||| || || |||| Sbjct 898 TCCTTCTGGATGTTGTAGTCGGCTAAAG-TG-CGGCCATCTTCGAGCTGTTTTCCGGCGA 841 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 | ||||| || || |||||| || | || || ||||| ||||| ||||| | | Sbjct 840 AGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTG-GCTTTCACA 782 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | || | |||||||| || | || |||||||| || || || |||||| Sbjct 781 TTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 722 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 721 ACGAAGATCTGCAT 708 >seq338 Length=211836 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| |||||||| |||| || ||||| ||| || | ||||| || ||||| | Sbjct 171299 CTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGA 171358 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 |||| ||||| || ||| | | || || ||||| || || ||| | || | Sbjct 171359 TGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTTAGCCTTGACATTGT 171418 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 || | || | ||||| || || | ||||||||||| || || ||||||||||||| Sbjct 171419 TGATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAA 171478 Query 34380 AGATCTGCAT 34389 | || ||||| Sbjct 171479 ATATTTGCAT 171488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323027908546880