Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq1360 114 8e-21
seq319 104 2e-17
seq51 104 2e-17
seq1427 95.1 8e-15
seq2834 89.7 3e-13
seq338 86.0 4e-12
>seq1360
Length=99280
Score = 114 bits (126), Expect = 8e-21
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||||||| | || || ||||| ||||||||||||| || ||| ||||
Sbjct 35105 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCT 35164
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||| || || ||||| || || ||||||||||| ||| | || ||||||||
Sbjct 35165 TCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 35224
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | |||| || | ||||| || || | || ||||||
Sbjct 35225 TGGATCTTAGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTT 35284
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| ||||| || |||||||| || |||||||||
Sbjct 35285 TTCCCGGTTAGGGTTTTCACGAATATCTGCATC 35317
>seq319
Length=213347
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | ||| || ||||| ||||||||||||| || ||| | ||
Sbjct 180753 AGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCC 180694
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || ||||| || | || ||||||||| ||| | | |||||||||
Sbjct 180693 TCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 180634
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | ||||| ||||| || | || |||||
Sbjct 180633 TGAATCTTAGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCAAGGGTAATGGTC 180574
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || |||||||| ||||||||||| |||||
Sbjct 180573 TTCCCTGTGAGAGTCTTCACAAAGATTTGCAT 180542
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||| ||||| | ||| || ||||| ||||||||||||| || ||| | ||
Sbjct 180525 AGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCC 180466
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || || || ||||||| |||||||| ||| | | ||||||||
Sbjct 180465 TCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 180406
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|| || ||| | | | | || | |||| |||||| || | ||||| ||
Sbjct 180405 TGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATTGTC 180346
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || || ||||| ||||||||||||||
Sbjct 180345 TTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 180314
>seq51
Length=574565
Score = 104 bits (114), Expect = 2e-17
Identities = 156/217 (72%), Gaps = 10/217 (5%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG-TC 34236
||||||||||| |||||| ||| ||||| || ||||| || | || || | || ||
Sbjct 464150 AGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCCAA-TGTCCTTCCATC 464092
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
||||||||||| || || || || |||| ||||||||| || | | |||||||||
Sbjct 464091 ATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTC 464032
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTCGACGTCCACCGTGA 34352
|||||| ||| | | |||||| ||| || ||| || |||| ||||
Sbjct 464031 CTGAATCTTTGTCTTAACGT----TATCGATAGTGTCAGAGCTTTCAACTTCCAGGGTGA 463976
Query 34353 TGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||||| || |||||||| ||||| || ||||||||
Sbjct 463975 TGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/194 (70%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| || || ||||||||||| | || | | | || ||||||||||| || |||||
Sbjct 463673 TCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAG 463614
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316
||||||| ||||||||| || | | |||||| || || ||||| ||| | ||
Sbjct 463613 ATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATC--CTGAATTTTGGTCTTGACAT 463556
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | || | | || || || | |||||||| ||||| || || |||||||
Sbjct 463555 TCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCA 463496
Query 34377 CAAAGATCTGCATC 34390
||||||| ||||||
Sbjct 463495 CAAAGATTTGCATC 463482
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| || || |||||||| || | || || | || ||||| ||||| || || ||
Sbjct 464585 TCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAAG 464526
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
||||||| ||||||||| ||| | | ||||||||| ||||| ||| | ||
Sbjct 464525 ATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACATTC 464466
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||| | | || || || | ||||| || || |||||||| || ||||||
Sbjct 464465 TCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCACA 464406
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 464405 AAGATCTGCAT 464395
>seq1427
Length=108667
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGG--ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256
|| ||||| ||||||||||||| | || || ||| | || || | ||| || || ||||
Sbjct 17791 TCCTTCTGGATGTTGTAGTCGGCTAAAG-TG-CGGCCATCTTCGAGCTGTTTTCCGGCGA 17734
Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315
| ||||| || || ||||| || | || || ||||| ||||| ||||| | |
Sbjct 17733 AGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTG-GCTTTGACA 17675
Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375
| | | || | ||||| |||||||| || | || |||||||| || || || ||||||
Sbjct 17674 TTGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 17615
Query 34376 ACAAAGATCTGCAT 34389
|| |||||||||||
Sbjct 17614 ACGAAGATCTGCAT 17601
>seq2834
Length=64598
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGG--ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256
|| ||||| ||||||||||||| | || || ||| | || || | ||| || || ||||
Sbjct 898 TCCTTCTGGATGTTGTAGTCGGCTAAAG-TG-CGGCCATCTTCGAGCTGTTTTCCGGCGA 841
Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315
| ||||| || || |||||| || | || || ||||| ||||| ||||| | |
Sbjct 840 AGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTG-GCTTTCACA 782
Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375
| | | || | || | |||||||| || | || |||||||| || || || ||||||
Sbjct 781 TTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 722
Query 34376 ACAAAGATCTGCAT 34389
|| |||||||||||
Sbjct 721 ACGAAGATCTGCAT 708
>seq338
Length=211836
Score = 86.0 bits (94), Expect = 4e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
||||||| |||||||| |||| || ||||| ||| || | ||||| || ||||| |
Sbjct 171299 CTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGA 171358
Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319
|||| ||||| || ||| | | || || ||||| || || ||| | || |
Sbjct 171359 TGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTTAGCCTTGACATTGT 171418
Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379
|| | || | ||||| || || | ||||||||||| || || |||||||||||||
Sbjct 171419 TGATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAA 171478
Query 34380 AGATCTGCAT 34389
| || |||||
Sbjct 171479 ATATTTGCAT 171488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323027908546880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |