Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq20 131 2e-25
>seq20
Length=765589
Score = 131 bits (144), Expect = 2e-25
Identities = 578/899 (64%), Gaps = 32/899 (4%)
Strand=Plus/Minus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || ||| ||||| || | ||||||||| ||||||||||| || || |||
Sbjct 522477 GACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 522418
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAA--TAGTATTTATCGC 16046
| | || || ||||| |||| || || || | |||| || || || |
Sbjct 522417 TGAAGAGAGATCAACTCCATCCAATCGAACGGGTTCT--GAACTCCGTAAACCTTTTCAC 522360
Query 16047 ATCCCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105
| ||||| | || | || | || || || ||||| || || ||||| |||| | |||
Sbjct 522359 A-CCCAAGTGCAGCCAACAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCA 522301
Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165
|||||||| || | | || || || | || || |||| || | | || || |
Sbjct 522300 CAGTTCATCCCAACCAGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCG 522241
Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTA-ACGGAGGGT-TTAATAAGTGTT 16223
|| || || | | ||| | | | | || | | | || || | || | |||
Sbjct 522240 ACTGCATCCTTTACTAT--CCCCTGC-ACCTTCTCAACACTCAGCTTCTTCTTCAGT--- 522187
Query 16224 TAAACATTATA-----CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278
|| | |||| || ||||||||||| || | |||||||| | ||| | |||
Sbjct 522186 -AAGCTGTATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTC 522128
Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATAT--AGCGGCA 16336
|||||| || || | ||| ||||||| || || ||||| | ||| || || ||| | |
Sbjct 522127 GTTTGAGAAGGTTAAACCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAA 522068
Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396
| | ||||| ||||| || |||||||| ||||| |||| ||| | |||| | ||
Sbjct 522067 ACT--TCCAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAAC 522010
Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456
| | | || || ||||| |||||||| ||| || | ||||||||
Sbjct 522009 GAT---TCAGCACCATCAATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGG 521953
Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT 16516
|| | || |||||| ||| | || | || || |||| || ||||| |||
Sbjct 521952 ATAGTTTCAATTGCACGAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCT 521893
Query 16517 ATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAA 16575
| || | | |||||||| || ||||| || || || || || || || ||||| |||
Sbjct 521892 AAAAGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAA 521833
Query 16576 GCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAAC 16635
|| | |||||| | | || || || || ||| | || | || ||| |||
Sbjct 521832 GC-GCGAGCTTCAGCAACCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAAC 521774
Query 16636 TATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT---T 16692
|| || || || || || || || || ||||| | || |||| | ||||| |
Sbjct 521773 GATGCCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGT 521714
Query 16693 ATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCA 16752
| | | || ||||| | || ||||| || | |||||| ||||| |||||||
Sbjct 521713 GGTTAAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCA 521654
Query 16753 AAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
|| ||||| |||| ||||| ||||||| ||| || | | ||| |||| || ||||
Sbjct 521653 GAATGAAGCTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACA 521595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462447259882800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |