Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq20 131 2e-25 >seq20 Length=765589 Score = 131 bits (144), Expect = 2e-25 Identities = 578/899 (64%), Gaps = 32/899 (4%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 522477 GACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 522418 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAA--TAGTATTTATCGC 16046 | | || || ||||| |||| || || || | |||| || || || | Sbjct 522417 TGAAGAGAGATCAACTCCATCCAATCGAACGGGTTCT--GAACTCCGTAAACCTTTTCAC 522360 Query 16047 ATCCCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | ||||| | || | || | || || || ||||| || || ||||| |||| | ||| Sbjct 522359 A-CCCAAGTGCAGCCAACAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCA 522301 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 |||||||| || | | || || || | || || |||| || | | || || | Sbjct 522300 CAGTTCATCCCAACCAGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCG 522241 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTA-ACGGAGGGT-TTAATAAGTGTT 16223 || || || | | ||| | | | | || | | | || || | || | ||| Sbjct 522240 ACTGCATCCTTTACTAT--CCCCTGC-ACCTTCTCAACACTCAGCTTCTTCTTCAGT--- 522187 Query 16224 TAAACATTATA-----CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 || | |||| || ||||||||||| || | |||||||| | ||| | ||| Sbjct 522186 -AAGCTGTATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTC 522128 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATAT--AGCGGCA 16336 |||||| || || | ||| ||||||| || || ||||| | ||| || || ||| | | Sbjct 522127 GTTTGAGAAGGTTAAACCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAA 522068 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 | | ||||| ||||| || |||||||| ||||| |||| ||| | |||| | || Sbjct 522067 ACT--TCCAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAAC 522010 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | | || || ||||| |||||||| ||| || | |||||||| Sbjct 522009 GAT---TCAGCACCATCAATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGG 521953 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT 16516 || | || |||||| ||| | || | || || |||| || ||||| ||| Sbjct 521952 ATAGTTTCAATTGCACGAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCT 521893 Query 16517 ATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAA 16575 | || | | |||||||| || ||||| || || || || || || || ||||| ||| Sbjct 521892 AAAAGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAA 521833 Query 16576 GCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAAC 16635 || | |||||| | | || || || || ||| | || | || ||| ||| Sbjct 521832 GC-GCGAGCTTCAGCAACCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAAC 521774 Query 16636 TATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT---T 16692 || || || || || || || || || ||||| | || |||| | ||||| | Sbjct 521773 GATGCCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGT 521714 Query 16693 ATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCA 16752 | | | || ||||| | || ||||| || | |||||| ||||| ||||||| Sbjct 521713 GGTTAAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCA 521654 Query 16753 AAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || ||||| |||| ||||| ||||||| ||| || | | ||| |||| || |||| Sbjct 521653 GAATGAAGCTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACA 521595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462447259882800