Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq63 109 1e-18 >seq63 Length=488123 Score = 109 bits (120), Expect = 1e-18 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| | | ||| ||| | || || || || || |||||||||| ||||||||| | Sbjct 277366 TGGACAGTGAGATAATCTATGACAGGGACTTTGACTATGATTTCTTTGGTTTCAAAACCC 277307 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| ||| |||||||| || || | || | | | ||||| || ||||||||| Sbjct 277306 TCGAGAGATCATATCTCCTGAAGGTTCAAGGGACGGTTGTGGAGAGACCGCAGCACATGC 277247 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC-TCGAGACGTAC 248961 ||||| | || ||||| ||||| ||||||||||| || || | || | || |||||||| Sbjct 277246 TGATGAGGGTTGCTGTTGGGATCCACAAGGATGATATCGA-ATCGGCCATCAAGACGTAC 277188 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | ||| || | ||| | || || || | || || |||||||| || || || Sbjct 277187 CACTTGATGTCCCAAAGGTGGTTCACCCACGCTTCTCCAACTCTCTTCAATGCGGGCAC 277129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073612342036864