Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq319 125 6e-24
seq51 105 5e-18
seq1360 89.7 4e-13
seq338 84.2 2e-11
seq355 82.4 6e-11
>seq319
Length=213347
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| || ||| | || ||
Sbjct 180750 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCA 180691
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| ||||||| ||| ||||| || || | |||||||||||| |
Sbjct 180690 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGA 180631
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || | ||| || || | |||||| |||||
Sbjct 180630 ATCTTAGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCAAGGGTAATGGTCTTC 180571
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || |||||||||||||||||||||||
Sbjct 180570 CCTGTGAGAGTCTTCACAAAGATTTGCAT 180542
Score = 105 bits (116), Expect = 5e-18
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || ||||| | | ||||| || || ||| ||||||||| ||||||||||| |
Sbjct 180996 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 180937
Query 45170 --AGT-TGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226
||| ||| ||| ||| || || || || ||||| ||||||| ||| ||||| ||
Sbjct 180936 AAAGTACGGCCATCCTCG---AGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGG 180880
Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286
|| | ||| ||||||||| ||| || |||||| | | | |||| | |||
Sbjct 180879 GGGATACCTTCCTTGTCCTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCA 180820
Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||||| ||||| ||||| || || |||||||| || || || |||||
Sbjct 180819 ACCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||| |||||||||||||| || || |||| || || ||||||||||||||
Sbjct 180277 CTCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCTAGCTGTTTTCCGGCGAA 180218
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| || || ||||| || || | || |||||||| || || ||| ||
Sbjct 180217 GATCAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTGACATT 180158
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| || ||| ||||| | || || ||||| || || || ||||| ||
Sbjct 180157 GTCAATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTTAAC 180098
Query 45325 AAAGATTTGCAT 45336
|||||||||||
Sbjct 180097 GAAGATTTGCAT 180086
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||||||||||||||| || || || | || || || || || || || ||
Sbjct 181417 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAA 181358
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| ||| ||||| || || | |||||||||||| || || ||| ||
Sbjct 181357 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTCACATT 181298
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | ||||| | ||| ||||||| || || |||||||| |||| ||||||||
Sbjct 181297 ATCAATAGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 181238
Query 45325 AAAGATTTGCAT 45336
||| || |||||
Sbjct 181237 AAAAATCTGCAT 181226
>seq51
Length=574565
Score = 105 bits (116), Expect = 5e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--T 45167
||||| |||| | | || ||||| || ||| |||||| || ||||||||||| |
Sbjct 463709 CCACCCCTCAGACGGAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCT 463650
Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227
|||| | | || |||| || || || ||||| || | || ||| ||||| || |
Sbjct 463649 AGAGTT--CTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTG 463592
Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287
| | ||||||||| ||| |||||| ||| || | | | |||| | |||||
Sbjct 463591 GGATACCCTCCTTATCCTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCA 463532
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| | ||| || |||||||| ||||| || |||||||||||||||||
Sbjct 463531 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 463483
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202
|||||| ||||||||||| || || ||| ||| | || |||| ||| || || ||
Sbjct 464586 CTCCTTTTGAATGTTGTAATCAGCCAAGGTT--CGACCATCCTCCAATTGCTTCCCAGCA 464529
Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262
|| || | || ||| ||||| || || | ||||||||||||| ||| || ||| ||
Sbjct 464528 AAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACA 464469
Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322
| | | | || | ||| ||||| | ||| || ||||| || || || ||||||
Sbjct 464468 TTCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTC 464409
Query 45323 ACAAAGATTTGCAT 45336
|||||||| |||||
Sbjct 464408 ACAAAGATCTGCAT 464395
>seq1360
Length=99280
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| |||| | | |||| ||| || || ||||||||| ||||||||||||
Sbjct 35090 CCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 35149
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
||| || |||| || || ||||||||||||||||||| ||||| ||||| || ||
Sbjct 35150 AGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGA 35209
Query 45230 ACACCCTCCTTGTC 45243
| || ||||||||
Sbjct 35210 ATGCCTTCCTTGTC 35223
>seq338
Length=211836
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208
||||| |||||||| ||| || || | ||| || ||||| ||||||||||| ||
Sbjct 171301 TTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGATG 171360
Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268
| |||||||| ||||| | | || || ||||| |||||| ||| ||
Sbjct 171361 AGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTTAGCCTTGACATTGTTG 171420
Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328
| | |||| | | || ||||| | ||| || || || ||||| ||||| ||||||||
Sbjct 171421 ATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAAAT 171480
Query 45329 ATTTGCATGTT 45339
|||||||| ||
Sbjct 171481 ATTTGCATTTT 171491
>seq355
Length=215899
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||| || | | ||| | || ||||| ||||||||||||| |||| ||
Sbjct 205066 CCACCTCTTAAACGGAGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCA 205007
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || || || || ||||| || || |||| | ||||||||| || ||
Sbjct 205006 AGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGA 204947
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || ||||| || |||||| || || | | | |||| | || |||
Sbjct 204946 ATGCCTTCCTTATCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACC 204887
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| | ||| || ||||| || || || |||||||||||||| ||||||
Sbjct 204886 TCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCATG 204839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395021281865158
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |