Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq319 125 6e-24 seq51 105 5e-18 seq1360 89.7 4e-13 seq338 84.2 2e-11 seq355 82.4 6e-11 >seq319 Length=213347 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| || ||| | || || Sbjct 180750 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCA 180691 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||||| ||| ||||| || || | |||||||||||| | Sbjct 180690 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGA 180631 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | ||| || || | |||||| ||||| Sbjct 180630 ATCTTAGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCAAGGGTAATGGTCTTC 180571 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||||||||||||||| Sbjct 180570 CCTGTGAGAGTCTTCACAAAGATTTGCAT 180542 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||| || || ||| ||||||||| ||||||||||| | Sbjct 180996 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 180937 Query 45170 --AGT-TGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 ||| ||| ||| ||| || || || || ||||| ||||||| ||| ||||| || Sbjct 180936 AAAGTACGGCCATCCTCG---AGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGG 180880 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||| ||||||||| ||| || |||||| | | | |||| | ||| Sbjct 180879 GGGATACCTTCCTTGTCCTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCA 180820 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| ||||| || || |||||||| || || || ||||| Sbjct 180819 ACCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| |||||||||||||| || || |||| || || |||||||||||||| Sbjct 180277 CTCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCTAGCTGTTTTCCGGCGAA 180218 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || || ||||| || || | || |||||||| || || ||| || Sbjct 180217 GATCAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTTGACATT 180158 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||| | || || ||||| || || || ||||| || Sbjct 180157 GTCAATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTTAAC 180098 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 180097 GAAGATTTGCAT 180086 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || || | || || || || || || || || Sbjct 181417 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAA 181358 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | |||||||||||| || || ||| || Sbjct 181357 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTCACATT 181298 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | ||||| | ||| ||||||| || || |||||||| |||| |||||||| Sbjct 181297 ATCAATAGTGTCCGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 181238 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 181237 AAAAATCTGCAT 181226 >seq51 Length=574565 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--T 45167 ||||| |||| | | || ||||| || ||| |||||| || ||||||||||| | Sbjct 463709 CCACCCCTCAGACGGAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCT 463650 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | || |||| || || || ||||| || | || ||| ||||| || | Sbjct 463649 AGAGTT--CTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTG 463592 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||||||||| ||| |||||| ||| || | | | |||| | ||||| Sbjct 463591 GGATACCCTCCTTATCCTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCA 463532 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| | ||| || |||||||| ||||| || ||||||||||||||||| Sbjct 463531 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 463483 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 |||||| ||||||||||| || || ||| ||| | || |||| ||| || || || Sbjct 464586 CTCCTTTTGAATGTTGTAATCAGCCAAGGTT--CGACCATCCTCCAATTGCTTCCCAGCA 464529 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || || | || ||| ||||| || || | ||||||||||||| ||| || ||| || Sbjct 464528 AAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACA 464469 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | | | | || | ||| ||||| | ||| || ||||| || || || |||||| Sbjct 464468 TTCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTC 464409 Query 45323 ACAAAGATTTGCAT 45336 |||||||| ||||| Sbjct 464408 ACAAAGATCTGCAT 464395 >seq1360 Length=99280 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| ||| || || ||||||||| |||||||||||| Sbjct 35090 CCACCCCTCAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 35149 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || |||| || || ||||||||||||||||||| ||||| ||||| || || Sbjct 35150 AGTGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGA 35209 Query 45230 ACACCCTCCTTGTC 45243 | || |||||||| Sbjct 35210 ATGCCTTCCTTGTC 35223 >seq338 Length=211836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||| |||||||| ||| || || | ||| || ||||| ||||||||||| || Sbjct 171301 TTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGATG 171360 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | |||||||| ||||| | | || || ||||| |||||| ||| || Sbjct 171361 AGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTTAGCCTTGACATTGTTG 171420 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | |||| | | || ||||| | ||| || || || ||||| ||||| |||||||| Sbjct 171421 ATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAAAT 171480 Query 45329 ATTTGCATGTT 45339 |||||||| || Sbjct 171481 ATTTGCATTTT 171491 >seq355 Length=215899 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| || | | ||| | || ||||| ||||||||||||| |||| || Sbjct 205066 CCACCTCTTAAACGGAGTACAAGATGGAGCGTTGACTCCTTCTGAATGGTGTAATCAGCA 205007 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || ||||| || || |||| | ||||||||| || || Sbjct 205006 AGGGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCAGGGGGA 204947 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || |||||| || || | | | |||| | || ||| Sbjct 204946 ATGCCTTCCTTATCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACC 204887 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||| || ||||| || || || |||||||||||||| |||||| Sbjct 204886 TCAAGGGTGATTGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCATG 204839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395021281865158