Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq20 134 1e-26
seq3991 86.0 6e-12
>seq20
Length=765589
Score = 134 bits (148), Expect = 1e-26
Identities = 375/565 (66%), Gaps = 18/565 (3%)
Strand=Plus/Minus
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| ||||||||||| ||||| || || |||| || || |||||||| || |||||
Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 14322
|| ||||| || || || ||||| | ||| || | || ||| ||| ||| || |||||
Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGA-TGGAGCAGAAACTTCCAGAGAAGAA 522053
Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382
|| || ||||| |||||| || || || | || ||||||| || | | |
Sbjct 522052 AATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACGA-----TTCAGCACCA 521998
Query 14383 T--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440
| ||||| |||||| || | || || |||| | || || |||||||| |||
Sbjct 521997 TCAATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCA 521938
Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TA 14499
||| | ||| ||| |||| | | ||||| || || | ||| ||| | ||
Sbjct 521937 CGAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAG-AAGAGAGTA 521879
Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG- 14558
|||||||||||| |||||||| || || || || || ||||| ||| | |||||| |
Sbjct 521878 CATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGC 521819
Query 14559 -ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617
||| || ||||| |||||| |||| | ||| || ||| || || ||
Sbjct 521818 AACC--TGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGAT 521761
Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGA--GTTTTT 14675
|| || || || || | |||| | || || | || || || || | | | ||
Sbjct 521760 GCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTT 521701
Query 14676 TCCAATCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734
||| | | | || ||| | |||||||| ||||| || | ||||| || ||| ||
Sbjct 521700 TCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCA 521641
Query 14735 GCTTTTTTATACATTACCCATATTT 14759
|||||||| |||||| |||| ||||
Sbjct 521640 GCTTTTTTGTACATTTCCCAGATTT 521616
>seq3991
Length=39150
Score = 86.0 bits (94), Expect = 6e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262
||| ||||||||||| || ||||| |||||||| ||||| ||||| || | |||||
Sbjct 4555 ACAGGCAAAATCACAGTGTAGGCCTTCATCTCTTGATATAAGCTCGTTCGAGTAAGTTAA 4496
Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302
|| ||||||| |||| ||||| ||||||||||| |||
Sbjct 4495 ACCAGGCATCATGCCTCTCTTTTTAAACCAAAATATGGCA 4456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482278083674640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |