Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq20 134 1e-26 seq3991 86.0 6e-12 >seq20 Length=765589 Score = 134 bits (148), Expect = 1e-26 Identities = 375/565 (66%), Gaps = 18/565 (3%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| ||||| || || |||| || || |||||||| || ||||| Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 14322 || ||||| || || || ||||| | ||| || | || ||| ||| ||| || ||||| Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGA-TGGAGCAGAAACTTCCAGAGAAGAA 522053 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || ||||| |||||| || || || | || ||||||| || | | | Sbjct 522052 AATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACGA-----TTCAGCACCA 521998 Query 14383 T--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | ||||| |||||| || | || || |||| | || || |||||||| ||| Sbjct 521997 TCAATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCA 521938 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TA 14499 ||| | ||| ||| |||| | | ||||| || || | ||| ||| | || Sbjct 521937 CGAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAG-AAGAGAGTA 521879 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG- 14558 |||||||||||| |||||||| || || || || || ||||| ||| | |||||| | Sbjct 521878 CATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGC 521819 Query 14559 -ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 ||| || ||||| |||||| |||| | ||| || ||| || || || Sbjct 521818 AACC--TGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGAT 521761 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGA--GTTTTT 14675 || || || || || | |||| | || || | || || || || | | | || Sbjct 521760 GCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTT 521701 Query 14676 TCCAATCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 ||| | | | || ||| | |||||||| ||||| || | ||||| || ||| || Sbjct 521700 TCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCA 521641 Query 14735 GCTTTTTTATACATTACCCATATTT 14759 |||||||| |||||| |||| |||| Sbjct 521640 GCTTTTTTGTACATTTCCCAGATTT 521616 >seq3991 Length=39150 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||||||||| || ||||| |||||||| ||||| ||||| || | ||||| Sbjct 4555 ACAGGCAAAATCACAGTGTAGGCCTTCATCTCTTGATATAAGCTCGTTCGAGTAAGTTAA 4496 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 || ||||||| |||| ||||| ||||||||||| ||| Sbjct 4495 ACCAGGCATCATGCCTCTCTTTTTAAACCAAAATATGGCA 4456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482278083674640