Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq843 104 2e-17 seq51 95.1 9e-15 seq6 82.4 6e-11 >seq843 Length=130910 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| ||||| || ||||| || ||||||||||| || || Sbjct 120356 CCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCA 120297 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | ||||||||||||||| || ||| |||| | | ||||||||| || Sbjct 120296 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 120237 Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||| || || || || ||| ||||| | | | ||||| | ||| Sbjct 120236 ATGCCTTCTTTGTCTTGGATCTTGGTT--TTGACATTGTCGATTGTGTCCGATGATTCGA 120179 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| | ||| ||| |||| || || | ||||| || ||||| ||||| ||| Sbjct 120178 CTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTTT 120126 >seq51 Length=574565 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || ||||| ||||||||||| || | ||| | | ||| Sbjct 463694 AGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCA 463635 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| || || || || |||| || || || || ||| || | || |||||||| Sbjct 463634 TCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCC 463575 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||||| | ||| || | ||||||| | Sbjct 463574 TGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTC 463515 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| ||||| ||||| |||||||| Sbjct 463514 TTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 463483 >seq6 Length=1196388 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || || || ||||| || ||||| || || | || | | ||| Sbjct 28807 AGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCA 28866 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| |||| | ||||| || ||| || | ||||||||| || Sbjct 28867 TCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 28926 Query 18234 GCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | |||| ||| | ||| ||||||| | ||| || | |||||| | Sbjct 28927 TGAATCT-TGGCTTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATGGT 28985 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || ||||| || || ||||||||||||||| Sbjct 28986 CTTCCCTGTCAAAGTCTTAACAAAAATTTGCATT 29019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379292228790510