Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq20 149 6e-31
seq1360 127 2e-24
seq843 122 8e-23
seq355 95.1 1e-14
seq319 95.1 1e-14
seq51 93.3 4e-14
>seq20
Length=765589
Score = 149 bits (164), Expect = 6e-31
Identities = 594/918 (65%), Gaps = 24/918 (3%)
Strand=Plus/Plus
Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATT-TGTCATGTTTCCGATTGAATATCCAGA 57568
|| |||||| | ||| || || |||||| ||| ||||| || |||||||| ||| |
Sbjct 521558 GACCCACTTCTCACAGAAAACCCAGATAGATTCTGT-ATGTTCCCAATTGAATACCCACA 521616
Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628
|| ||| | ||||||||||| || ||||| || || ||||| | ||||||||| || ||
Sbjct 521617 AATCTGGGAAATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCT 521676
Query 57629 GTCTAAGGATCTGAGCGATTGGGATTCCCTC-AAAGAATCTGAGAGAA--ATTTTATTAA 57685
|| | ||| | | | ||||| || || || | | || | |||| || |
Sbjct 521677 TTCGCAAGATGTTCGTCACTGGGAAACCATCTTAACCACCGACGAACAGCATTTCATCAC 521736
Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745
||| | | || || ||||||||||| || || || ||| ||||||| | | || |||
Sbjct 521737 CCACATCCTCGCCTTCTTCGCCGCATCAGACGGCATCGTTCTCGAGAATCTCGCCGGAAG 521796
Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCA 57804
||| | || || || || | || || | ||||| || || || ||| | ||||
Sbjct 521797 ATTCATGAAGGAGGTTCAGGTTGCTGAAGCTCG-CGCTTTCTATGGCTTCCAAATCGCCA 521855
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA---CA 57861
|||||||| | || || |||||||| || || || | || || ||| | || || |
Sbjct 521856 TTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAACTTACATCAAAGATTCTA 521915
Query 57862 ACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921
|| ||| | | || || || || ||||| || || | |||||||
Sbjct 521916 ACCTTAAGACCCAT---CTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGG 521972
Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981
|||| ||| | | ||||| | | | | | |||| || |||||| | || |
Sbjct 521973 CAGATTGGGCTCTTCGTTGGATTGATGGTG---CTGAATCGTTTGCTGAGAGGTTGATTG 522029
Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATG 58040
| || || || ||||| || ||||| || || || || ||| | || || ||| |
Sbjct 522030 CTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGC-TCCATCTTCTGGCTC 522088
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
|| || || || | ||||| || | || || |||||| |||||||||| |||||
Sbjct 522089 AAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCAAACGAGCTGATATCGCGAGACGAA 522148
Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTAC-TCTCACATTGTCAATAAACCGACGCG 58159
|| || || ||||||||| ||||| | ||| || || | || || | ||
Sbjct 522149 GGGCTTCACTGTGATTTTGCCTGCCTGCTATACAGCTTAC-TGAAGAAGAAGCTGAGTGT 522207
Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219
|| | || || | | || || |||| ||||| ||||| || |||||
Sbjct 522208 TGAGAAGGTGCAGGGGATAGTAAAGGATGCAGTCGAAATCGAGCGAGAGTTCGTAACCGA 522267
Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279
|| || |||||| || | || |||||| ||| ||||| |||||||||||||
Sbjct 522268 TGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGCCAGTACATTGAGTT 522327
Query 58280 TGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAAT 58337
|||||| ||||| || ||| | ||| | | || | || |||| | ||
Sbjct 522328 TGTTGCAGACAGGCTGTTGGCTGCACTTGGGTGTGAAAAGGT--TTACGGAGTTCAGAAC 522385
Query 58338 CCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaa 58397
||||| |||| ||| | ||||||| || | || ||||| || || || || || | |
Sbjct 522386 CCGTTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGA 522445
Query 58398 GTTAGCGAATATCAAAAA 58415
||| | || ||||| |||
Sbjct 522446 GTTGGGGAGTATCAGAAA 522463
>seq1360
Length=99280
Score = 127 bits (140), Expect = 2e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || || || || || ||||| || ||| | || |||||| |
Sbjct 35319 AAGATGCAGATATTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 35260
Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|| |||| |||| | || || || ||| | |||||||||||| | || || ||
Sbjct 35259 TCAGACACGATCGACAATGTGAAGACTAAGA-TCCAAGACAAGGAAGGCATTCCCCCAGA 35201
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
|||||||||||| |||||||| || |||||| | |||||| ||| | ||| ||
Sbjct 35200 CCAGCAGCGTCTGATATTCGCCGGAAAACAGCTCGAAGACGGCCGGACACTCGCCGACTA 35141
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||||| || || || ||||| ||||| ||||| ||| | |||||||| |||
Sbjct 35140 CAACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGTCTGAGGGGTGGT 35089
>seq843
Length=130910
Score = 122 bits (134), Expect = 8e-23
Identities = 170/236 (72%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| |||||||| || || || || || ||||| || ||| | || || |||
Sbjct 120124 TCAAAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAA 120183
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
| || |||| |||| | |||||| | || ||||| |||||| | || ||
Sbjct 120184 TCATCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCA 120243
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GA 31365
|| || || || |||| || ||||| ||||| |||||||| | | || | || ||
Sbjct 120244 GATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGA-TGGAAGAACACTTGCAGA 120302
Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| |||||||| || |||||||| ||||||||||| ||| |||| | || ||||
Sbjct 120303 TTACAACATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGGGGGTA 120358
>seq355
Length=215899
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || || || |||| || ||||| |||||| | || ||||| ||
Sbjct 205296 ATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTCA 205355
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| | ||||| || ||| || |||||||||||| | || || |||||
Sbjct 205356 GATACTATCGATAATGTCAAGACTAAGA-TACAGGACAAGGAAGGAATTCCACCAGACCA 205414
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || || ||||| || |||||||| || ||| || || || ||
Sbjct 205415 GCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACAA 205474
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|||||| || ||||| || ||||| || || |||
Sbjct 205475 CATTCAGAAGGAATCCACCCTTCACCTTGTCCTT 205508
>seq319
Length=213347
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| |||| || || || |||||| |||| ||||| ||
Sbjct 180998 ATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTTGAGAGCTCG 181057
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || ||||||||||||| | || || ||||||
Sbjct 181058 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 181117
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || || || || ||| ||||||| | |||| | ||||| ||
Sbjct 181118 CAGAGGTTGATTTTTGCCGGGAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAAT 181177
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || || || || ||||| |||| || | ||||||| ||
Sbjct 181178 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTTTGAGGGGAGG 181224
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| || || || || || ||||| |||| || || |||
Sbjct 180086 ATGCAAATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 180145
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || ||| | ||||||||||| | || || |||||
Sbjct 180146 GACACCATTGACAATGTCAAGACTAAGA-TCCAAGACAAGGAAGGGATTCCCCCAGACCA 180204
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370
||| | || || ||||| || |||||| | || ||| || | ||| || || |
Sbjct 180205 GCAAAGGCTGATCTTCGCCGGAAAACAGCTAGAGGACGGCCGAACCCT-AGCTGACTACA 180263
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||||||||| || || |||||||| || || || | || ||||| ||
Sbjct 180264 ACATTCAAAAGGAGTCAACTCTTCACCTTGTGCTCCGTCTCAGGGGAGG 180312
>seq51
Length=574565
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || |||||||| ||||||||| | || || ||| | ||
Sbjct 463711 ATGCAGATCTTTGTCAAGACCCTAACAGGCAAGACGATCACCTTGGAAGTCGAAACTTCT 463770
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || || || ||| || ||||| | || || ||||||
Sbjct 463771 GACACCATTGAGAATGTGAAGACGAAGATCCAGGATAAAGAAGGGATCCCACCGGACCAG 463830
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || ||||| || ||| | || || |||| | || ||||||
Sbjct 463831 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 463890
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || ||||| ||| |||| || | ||||||| ||||
Sbjct 463891 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTCCGTTTGAGGGGAGGTA 463939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445704003848160
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