Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq20 149 6e-31 seq1360 127 2e-24 seq843 122 8e-23 seq355 95.1 1e-14 seq319 95.1 1e-14 seq51 93.3 4e-14 >seq20 Length=765589 Score = 149 bits (164), Expect = 6e-31 Identities = 594/918 (65%), Gaps = 24/918 (3%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATT-TGTCATGTTTCCGATTGAATATCCAGA 57568 || |||||| | ||| || || |||||| ||| ||||| || |||||||| ||| | Sbjct 521558 GACCCACTTCTCACAGAAAACCCAGATAGATTCTGT-ATGTTCCCAATTGAATACCCACA 521616 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 || ||| | ||||||||||| || ||||| || || ||||| | ||||||||| || || Sbjct 521617 AATCTGGGAAATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCT 521676 Query 57629 GTCTAAGGATCTGAGCGATTGGGATTCCCTC-AAAGAATCTGAGAGAA--ATTTTATTAA 57685 || | ||| | | | ||||| || || || | | || | |||| || | Sbjct 521677 TTCGCAAGATGTTCGTCACTGGGAAACCATCTTAACCACCGACGAACAGCATTTCATCAC 521736 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| | | || || ||||||||||| || || || ||| ||||||| | | || ||| Sbjct 521737 CCACATCCTCGCCTTCTTCGCCGCATCAGACGGCATCGTTCTCGAGAATCTCGCCGGAAG 521796 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCA 57804 ||| | || || || || | || || | ||||| || || || ||| | |||| Sbjct 521797 ATTCATGAAGGAGGTTCAGGTTGCTGAAGCTCG-CGCTTTCTATGGCTTCCAAATCGCCA 521855 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA---CA 57861 |||||||| | || || |||||||| || || || | || || ||| | || || | Sbjct 521856 TTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAACTTACATCAAAGATTCTA 521915 Query 57862 ACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 || ||| | | || || || || ||||| || || | ||||||| Sbjct 521916 ACCTTAAGACCCAT---CTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGG 521972 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 |||| ||| | | ||||| | | | | | |||| || |||||| | || | Sbjct 521973 CAGATTGGGCTCTTCGTTGGATTGATGGTG---CTGAATCGTTTGCTGAGAGGTTGATTG 522029 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATG 58040 | || || || ||||| || ||||| || || || || ||| | || || ||| | Sbjct 522030 CTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGC-TCCATCTTCTGGCTC 522088 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 || || || || | ||||| || | || || |||||| |||||||||| ||||| Sbjct 522089 AAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCAAACGAGCTGATATCGCGAGACGAA 522148 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTAC-TCTCACATTGTCAATAAACCGACGCG 58159 || || || ||||||||| ||||| | ||| || || | || || | || Sbjct 522149 GGGCTTCACTGTGATTTTGCCTGCCTGCTATACAGCTTAC-TGAAGAAGAAGCTGAGTGT 522207 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 || | || || | | || || |||| ||||| ||||| || ||||| Sbjct 522208 TGAGAAGGTGCAGGGGATAGTAAAGGATGCAGTCGAAATCGAGCGAGAGTTCGTAACCGA 522267 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 || || |||||| || | || |||||| ||| ||||| ||||||||||||| Sbjct 522268 TGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGCCAGTACATTGAGTT 522327 Query 58280 TGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAAT 58337 |||||| ||||| || ||| | ||| | | || | || |||| | || Sbjct 522328 TGTTGCAGACAGGCTGTTGGCTGCACTTGGGTGTGAAAAGGT--TTACGGAGTTCAGAAC 522385 Query 58338 CCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaa 58397 ||||| |||| ||| | ||||||| || | || ||||| || || || || || | | Sbjct 522386 CCGTTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGA 522445 Query 58398 GTTAGCGAATATCAAAAA 58415 ||| | || ||||| ||| Sbjct 522446 GTTGGGGAGTATCAGAAA 522463 >seq1360 Length=99280 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || ||||| || ||| | || |||||| | Sbjct 35319 AAGATGCAGATATTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 35260 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || || ||| | |||||||||||| | || || || Sbjct 35259 TCAGACACGATCGACAATGTGAAGACTAAGA-TCCAAGACAAGGAAGGCATTCCCCCAGA 35201 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| |||||||| || |||||| | |||||| ||| | ||| || Sbjct 35200 CCAGCAGCGTCTGATATTCGCCGGAAAACAGCTCGAAGACGGCCGGACACTCGCCGACTA 35141 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || ||||| ||||| ||||| ||| | |||||||| ||| Sbjct 35140 CAACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGTCTGAGGGGTGGT 35089 >seq843 Length=130910 Score = 122 bits (134), Expect = 8e-23 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| |||||||| || || || || || ||||| || ||| | || || ||| Sbjct 120124 TCAAAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAA 120183 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 | || |||| |||| | |||||| | || ||||| |||||| | || || Sbjct 120184 TCATCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCA 120243 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GA 31365 || || || || |||| || ||||| ||||| |||||||| | | || | || || Sbjct 120244 GATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGA-TGGAAGAACACTTGCAGA 120302 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| |||||||| || |||||||| ||||||||||| ||| |||| | || |||| Sbjct 120303 TTACAACATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGGGGGTA 120358 >seq355 Length=215899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || |||| || ||||| |||||| | || ||||| || Sbjct 205296 ATGCAAATATTTGTTAAAACCTTGACTGGGAAAACCATCACCTTGGAGGTTGAGAGCTCA 205355 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | ||||| || ||| || |||||||||||| | || || ||||| Sbjct 205356 GATACTATCGATAATGTCAAGACTAAGA-TACAGGACAAGGAAGGAATTCCACCAGACCA 205414 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| || |||||||| || ||| || || || || Sbjct 205415 GCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTTTGGCAGACTACAA 205474 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || ||||| || ||||| || || ||| Sbjct 205475 CATTCAGAAGGAATCCACCCTTCACCTTGTCCTT 205508 >seq319 Length=213347 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| || || || |||||| |||| ||||| || Sbjct 180998 ATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTTGAGAGCTCG 181057 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||||||| | || || |||||| Sbjct 181058 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 181117 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || ||| ||||||| | |||| | ||||| || Sbjct 181118 CAGAGGTTGATTTTTGCCGGGAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAAT 181177 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || ||||| |||| || | ||||||| || Sbjct 181178 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTTTGAGGGGAGG 181224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || ||||| |||| || || ||| Sbjct 180086 ATGCAAATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 180145 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||| | || || ||||| Sbjct 180146 GACACCATTGACAATGTCAAGACTAAGA-TCCAAGACAAGGAAGGGATTCCCCCAGACCA 180204 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 ||| | || || ||||| || |||||| | || ||| || | ||| || || | Sbjct 180205 GCAAAGGCTGATCTTCGCCGGAAAACAGCTAGAGGACGGCCGAACCCT-AGCTGACTACA 180263 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||| || || |||||||| || || || | || ||||| || Sbjct 180264 ACATTCAAAAGGAGTCAACTCTTCACCTTGTGCTCCGTCTCAGGGGAGG 180312 >seq51 Length=574565 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| ||||||||| | || || ||| | || Sbjct 463711 ATGCAGATCTTTGTCAAGACCCTAACAGGCAAGACGATCACCTTGGAAGTCGAAACTTCT 463770 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||| || ||||| | || || |||||| Sbjct 463771 GACACCATTGAGAATGTGAAGACGAAGATCCAGGATAAAGAAGGGATCCCACCGGACCAG 463830 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| | || || |||| | || |||||| Sbjct 463831 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 463890 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| ||| |||| || | ||||||| |||| Sbjct 463891 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTCCGTTTGAGGGGAGGTA 463939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445704003848160