Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq20 201 1e-46
>seq20
Length=765589
Score = 201 bits (222), Expect = 1e-46
Identities = 408/601 (68%), Gaps = 11/601 (2%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || ||||| ||||| || || ||||||| || | ||||| || || || |
Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||||| ||||||||||| ||||| || ||||| ||| ||| || |||||
Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAA 522052
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATG 33757
|| ||||| || |||||| ||||| | ||||| || ||| | || | |||
Sbjct 522051 ATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCA-AACGATTCAGCACCATCA-- 521995
Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| |||||||||| |||||||| || |||||||| || ||||| || |||
Sbjct 521994 -ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 521936
Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877
||| |||| | | || ||| |||||| | ||||| || | | |||| |||||
Sbjct 521935 AAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACAT 521876
Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937
||| || ||||||||||||||||| || || || || |||||| | ||| || | ||
Sbjct 521875 TTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAAC 521816
Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997
||| || || | |||| | | || | ||| || || || || || || ||
Sbjct 521815 CTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGC 521756
Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT--TATTCCA 34054
|| || || | | || | || |||| | |||||| | ||| || | | | |||
Sbjct 521755 GAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCA 521696
Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114
| | | ||||| || | ||| |||||||| | ||||| ||||| || || || ||
Sbjct 521695 GTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTT 521636
Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174
||| ||||| | |||||| | | |||| |||||||| ||| ||||||| ||| ||
Sbjct 521635 TTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTT 521576
Query 34175 T 34175
|
Sbjct 521575 T 521575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629729441281440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |