Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq355 98.7 1e-15 seq6 96.9 3e-15 seq1427 95.1 1e-14 seq1360 93.3 4e-14 seq2834 91.5 1e-13 seq843 82.4 8e-11 >seq355 Length=215899 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || ||||||| |||||||| ||||| || || || || Sbjct 205294 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 205235 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| || |||||||| || || ||| |||| | | ||||||||| || || Sbjct 205234 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATTAACCTTTGCTGATCTGGGGGA 205175 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 ||||| || || || ||| | |||| || | | || || |||| | ||| || Sbjct 205174 ATGCCCTCCTTATCT-TGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAACTCTCGAC 205116 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||| || ||||| || || |||||||||||||| Sbjct 205115 CTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCAT 205068 >seq6 Length=1196388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||| || || |||||||| || | || | || ||| Sbjct 29950 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGTTCGGCCATCCTCG 30009 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||||||||| |||||||| || || || |||||||| || || Sbjct 30010 AGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCTTTATC-TTG 30068 Query 139676 ATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| || || | | || | || || | ||| ||||||| || | | ||| Sbjct 30069 AATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCGACCTCAAGAGTTATGGACTT 30128 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||||| || || |||||||| Sbjct 30129 GCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| ||||| | || | || | || |||||||| || || Sbjct 29734 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCA-TCCTCGAGCTGCTTCCC 29792 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||| | |||||||| || || || ||||||||||| ||| | || || | Sbjct 29793 AGCAAAGATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTC-CTGAATCTTGGTCT 29851 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || || ||||| | | || ||||| | ||| | || || || ||||| | Sbjct 29852 TAACATTGTCGACAGTGTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAAG 29911 Query 139746 TTTTTACGAATATTTGCAT 139764 | ||||| || |||||||| Sbjct 29912 TCTTTACAAAGATTTGCAT 29930 >seq1427 Length=108667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || ||||| || || ||||| || ||| Sbjct 17827 CCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 17768 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||||| || || |||| |||||||| || || || || Sbjct 17767 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 17708 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || ||| | | || | || |||| || || ||| Sbjct 17707 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCGGAGGATTCGACC 17648 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| ||||| || ||||| Sbjct 17647 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 17601 >seq1360 Length=99280 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || ||| | ||| | |||||||||||| Sbjct 35113 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTCGAGCTG 35172 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || || | |||||||| ||||| || || || |||||||| ||||| ||| || Sbjct 35173 TTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 35232 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | || || ||||| | ||| | || || ||||| Sbjct 35233 AGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGT 35292 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| |||||||| ||||| Sbjct 35293 TAGGGTTTTCACGAATATCTGCAT 35316 >seq2834 Length=64598 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || ||||| || || ||||| || ||| | |||| ||||| Sbjct 917 AACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTC 858 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| || || |||| || ||||| || ||||| || |||||||||||||| Sbjct 857 GAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTG 798 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || ||| | | || | |||||| | || || || || | ||| | || || Sbjct 797 GATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTT 738 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| || ||||| Sbjct 737 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 708 >seq843 Length=130910 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| || || || |||||||| ||||| | ||| || ||||| | ||| Sbjct 120332 TGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTGT 120273 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| | ||||| ||||| || || |||||||||||||| ||| || Sbjct 120272 TTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTG 120213 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | || | |||||| | | || || || | ||| | || || || || Sbjct 120212 GTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTTCCCAGTT 120153 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 120152 AGGGTTTTCACGAAAATCTGCAT 120130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495994563441600