Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq20 203 5e-47
>seq20
Length=765589
Score = 203 bits (224), Expect = 5e-47
Identities = 410/600 (68%), Gaps = 9/600 (2%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || ||||| ||||| || || ||||||| || || ||||| || || || |
Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078
|| ||||||| ||||||||||| ||||| || ||||| ||| || ||||| |||||
Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCCAGAGAAGAA 522053
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT--CATGT 50136
|| ||||| || ||||| |||| | ||||| || ||| | | | |||
Sbjct 522052 AATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCA-AAC-GATTCAGCACCATCA 521995
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196
||||| |||||||||| |||||||| || |||||||| || ||||| || ||| |
Sbjct 521994 ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGA 521935
Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256
|| |||| | | || ||| |||||| | ||||| || | | |||| ||||||
Sbjct 521934 AAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATT 521875
Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316
|| || ||||||||||||||||| || || || || |||||| | ||| || | || |
Sbjct 521874 TCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACC 521815
Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376
|| || || | |||| | | || | ||| || || || ||||| || ||
Sbjct 521814 TGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCG 521755
Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTT--TATTCCAA 50433
|| || || | | || | || ||||| | ||||| || ||| || | | | |||
Sbjct 521754 AAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAG 521695
Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493
| | | ||||| || | ||| |||||||| | ||||| ||||| || || || |||
Sbjct 521694 TGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTT 521635
Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
|| ||||| | |||||| | | |||| |||||||| ||| ||||||| ||| |||
Sbjct 521634 TTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTT 521575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718168260324720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |