Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq843 109 4e-19 seq338 82.4 6e-11 >seq843 Length=130910 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | ||||| ||| | || ||||| || | |||||||| | Sbjct 120356 CCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCA 120297 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 120296 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 120237 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||||| || | | |||||| | ||||| Sbjct 120236 ATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCCGATGATTCGACT 120177 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| ||||| ||||| || ||||| |||||||| ||||| ||||| || Sbjct 120176 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTT 120127 >seq338 Length=211836 Score = 82.4 bits (90), Expect = 6e-11 Identities = 130/186 (70%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||||| | ||||| | ||| || | ||| || ||||| || || | |||||| Sbjct 171310 TTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGATGAGGCGCTGT 171369 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCT----TTGACTCTGCCAACTGT 43046 ||||||| | | |||||||| || || || | | ||||| || | || Sbjct 171370 TGATCGGGTTGAATGCCTTCTTTGTC----ATGAATTTTAGCCTTGACATTGTTGATGGT 171425 Query 43047 GTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTG 43106 ||| | || || || || | || || ||||| || || |||||||||||||| ||||| Sbjct 171426 GTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAAATATTTG 171485 Query 43107 CATTTT 43112 |||||| Sbjct 171486 CATTTT 171491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381317552345484