Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq843 109 4e-19
seq338 82.4 6e-11
>seq843
Length=130910
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| |||| | ||||| ||| | || ||||| || | |||||||| |
Sbjct 120356 CCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCA 120297
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| | | | || ||||||||||| || ||||| || || || |||||||| | ||
Sbjct 120296 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 120237
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||||| || |||| |||||| || | | |||||| | |||||
Sbjct 120236 ATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCCGATGATTCGACT 120177
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|||| ||||| ||||| || ||||| |||||||| ||||| ||||| ||
Sbjct 120176 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTT 120127
>seq338
Length=211836
Score = 82.4 bits (90), Expect = 6e-11
Identities = 130/186 (70%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990
|||||||||| | ||||| | ||| || | ||| || ||||| || || | ||||||
Sbjct 171310 TTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGAAGATGAGGCGCTGT 171369
Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCT----TTGACTCTGCCAACTGT 43046
||||||| | | |||||||| || || || | | ||||| || | ||
Sbjct 171370 TGATCGGGTTGAATGCCTTCTTTGTC----ATGAATTTTAGCCTTGACATTGTTGATGGT 171425
Query 43047 GTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTG 43106
||| | || || || || | || || ||||| || || |||||||||||||| |||||
Sbjct 171426 GTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAAATATTTG 171485
Query 43107 CATTTT 43112
||||||
Sbjct 171486 CATTTT 171491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381317552345484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |