Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq20 210 3e-49
>seq20
Length=765589
Score = 210 bits (232), Expect = 3e-49
Identities = 411/602 (68%), Gaps = 13/602 (2%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| || ||||| ||||| || || || |||| || | ||||| || || || |
Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183
|| ||||||| ||||||||||| ||||| || || || ||| || |||||| |||||
Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCCAGAGAAGAA 522053
Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCAT 42239
|| ||||| || ||||| ||||| | ||||| || ||| | |||| |||
Sbjct 522052 AATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCA-AACGATTCAGCACCATCA- 521995
Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299
||||| |||||||||| |||||||| || |||||||| || ||||| || |||
Sbjct 521994 --ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 521937
Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359
||| |||| | | || ||| |||||| | || || || | | |||| ||||
Sbjct 521936 GAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACA 521877
Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419
|||| || ||||||||||||||||| || || || || |||||| | || || | ||
Sbjct 521876 TTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 521817
Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479
|||| || || | |||| | | || | ||| ||| || || ||||| || |
Sbjct 521816 CCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGG 521757
Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTCC 42536
| || || || | | || | || |||| | |||||| | ||||| | | ||
Sbjct 521756 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCC 521697
Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596
| | | | ||||| || | ||| |||||||| | ||||| ||||| ||||| || |
Sbjct 521696 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 521637
Query 42597 TTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGAT 42656
|||| ||||| | |||||| | | |||| ||||||||| ||| ||||||| ||| |
Sbjct 521636 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGT 521577
Query 42657 TT 42658
||
Sbjct 521576 TT 521575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671045257290480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |