Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq355 95.1 1e-14
seq843 89.7 5e-13
seq6 82.4 8e-11
>seq355
Length=215899
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| |||||| | || || |||| |||||| || ||||| || ||||| ||
Sbjct 205294 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 205235
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || ||| || ||||| || || || ||| |||| | | ||||||||| || ||
Sbjct 205234 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATTAACCTTTGCTGATCTGGGGGA 205175
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
||||| || || || ||| ||| || | | || | ||||| | || ||
Sbjct 205174 ATGCCCTCCTTATCTTGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAACTCTCGACC 205115
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | |||||| || ||||| || || ||||||||||||||
Sbjct 205114 TCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCAT 205068
>seq843
Length=130910
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040
||||| || ||||| || || ||||||||||| | ||| || ||||| | |||
Sbjct 120333 ATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTG 120274
Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100
||| |||||| |||| | ||||| ||||| || || |||||||||||||| || ||
Sbjct 120273 TTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTT 120214
Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160
||| | | || | ||||||| | ||| ||||| | || | || || || ||
Sbjct 120213 GGTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTTCCCAGT 120154
Query 143161 CAATGTTTTTACGAATATTTGCAT 143184
| ||||| ||||| || |||||
Sbjct 120153 TAGGGTTTTCACGAAAATCTGCAT 120130
>seq6
Length=1196388
Score = 82.4 bits (90), Expect = 8e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
|| ||||| |||||||||||| |||||||||| |||||||| || || || ||||||||
Sbjct 30004 TCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCTTTA 30063
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| |||||| || | | || | ||| || | || || |||| ||| |
Sbjct 30064 TCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCGACCTCAAGAGTTATG 30123
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| |||||| || | ||||| || || ||||||||
Sbjct 30124 GACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506943430659360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |