Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq355 95.1 1e-14 seq843 89.7 5e-13 seq6 82.4 8e-11 >seq355 Length=215899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| |||||| | || || |||| |||||| || ||||| || ||||| || Sbjct 205294 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 205235 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| || ||||| || || || ||| |||| | | ||||||||| || || Sbjct 205234 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATTAACCTTTGCTGATCTGGGGGA 205175 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||| ||| || | | || | ||||| | || || Sbjct 205174 ATGCCCTCCTTATCTTGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAACTCTCGACC 205115 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| || ||||| || || |||||||||||||| Sbjct 205114 TCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCAT 205068 >seq843 Length=130910 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| || ||||| || || ||||||||||| | ||| || ||||| | ||| Sbjct 120333 ATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTG 120274 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| |||| | ||||| ||||| || || |||||||||||||| || || Sbjct 120273 TTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTT 120214 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| | | || | ||||||| | ||| ||||| | || | || || || || Sbjct 120213 GGTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTTCCCAGT 120154 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| || ||||| Sbjct 120153 TAGGGTTTTCACGAAAATCTGCAT 120130 >seq6 Length=1196388 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| |||||||||||| |||||||||| |||||||| || || || |||||||| Sbjct 30004 TCCTCGAGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCTTTA 30063 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || |||||| || | | || | ||| || | || || |||| ||| | Sbjct 30064 TCTTGAATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCGACCTCAAGAGTTATG 30123 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||||| || | ||||| || || |||||||| Sbjct 30124 GACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 30158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506943430659360