Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq338 127 1e-24
seq1427 116 3e-21
seq843 116 3e-21
seq6 105 5e-18
seq2834 100 2e-16
seq355 100 2e-16
seq51 82.4 6e-11
>seq338
Length=211836
Score = 127 bits (140), Expect = 1e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 15171 AATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGT 15230
|| |||| || |||||||||||| |||| | | |||||| | ||| || || |||
Sbjct 171296 AACCTTTCTGGATGTTGTAATCGGCTAGAGTACGGTTGTCTTCAAGTTGCTTTCCGGCGA 171355
Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAA 15290
| || | || ||||| ||| | |||| |||||||||||| |||||| ||| |||
Sbjct 171356 AGATGAGGCGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGAATTTTAGCCTTGACAT 171415
Query 15291 TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15350
| | ||||| || ||| ||| || || | ||| ||||||||||| || |||||||| |
Sbjct 171416 TGTTGATGGTGTCACTAGATTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCA 171475
Query 15351 CAAAAATTTGCATATTTG 15368
|||| |||||||| ||||
Sbjct 171476 CAAATATTTGCATTTTTG 171493
>seq1427
Length=108667
Score = 116 bits (128), Expect = 3e-21
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||||||||| || || || |||||||| ||| || | | | | ||||| | |||
Sbjct 17803 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 17744
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| || ||| | || | |||||||||||| ||| || ||||||||||| || |||
Sbjct 17743 TTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTG 17684
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|| ||| | || ||||||||| ||| || |||| ||| ||||||||||| ||
Sbjct 17683 GCTTTGACATTGTCGATGGTATCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTT 17624
Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367
|| ||||| || || || ||||| |||
Sbjct 17623 AGGGTTTTCACGAAGATCTGCATTTTT 17597
>seq843
Length=130910
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||| || || || || || ||||||||||| || |||| | ||||| |||||
Sbjct 120333 ATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTG 120274
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||| ||||| | || || |||||||| || ||| || ||||||||||| || ||
Sbjct 120273 TTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTT 120214
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCTG 15338
| | || ||| | || || || || | || ||| || |||| ||| |||||||| || |
Sbjct 120213 GGTTTTGACATTGTCGATTGTGTC-CGATGATTCGACTTCTAGGGTTATGGTTTTCCCAG 120155
Query 15339 TCAGAGTTTTTACAAAAATTTGCATATTTGA 15369
| || ||||| || ||||| ||||| |||||
Sbjct 120154 TTAGGGTTTTCACGAAAATCTGCATCTTTGA 120124
>seq6
Length=1196388
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| |||| | ||| | ||| ||||| || || || || || ||||||||
Sbjct 29020 CCACCTCTTAATCGGAGAACAAGATGGAGGGTTGACTCCTTCTGGATATTGTAATCAGCA 29079
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | | || || | || || ||||| | ||||| | || || || ||
Sbjct 29080 AGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 29139
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
||||| || ||||| ||||||| |||| ||| | || || || ||| | || ||
Sbjct 29140 ATTCCCTCCTTGTCTTGAATTTTGGTCTTAACATTGTCAATAGTGTCGGAGCTCTCAACC 29199
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| || || ||||| | |||||| |||||||||||||||
Sbjct 29200 TCCAAAGTAATAGTCTTCCCTGTTAAAGTTTTCACAAAAATTTGCATA 29247
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| || |||| | || | ||| ||||| || || || || |||||||||||
Sbjct 29704 CCACCCCTTAATCGGAGCACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 29763
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | || || | || || ||||| | ||||| | || || || ||
Sbjct 29764 AGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGG 29823
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||||||||| ||| ||| |||| ||| | || | || || |||| ||
Sbjct 29824 ATTCCTTCTTTGTCCTGAATCTTGGTCTTAACATTGTCGACAGTGTCAGAGCTTTCAACC 29883
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||||||| ||||| ||||||| ||| |||||||| ||||||||
Sbjct 29884 TCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTTACAAAGATTTGCAT 29930
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| || |||| | ||| | ||| ||||| || || || || |||||||||||
Sbjct 29476 CCACCCCTTAATCGGAGAACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 29535
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | || || | || || ||||| | ||||| | || || || |||
Sbjct 29536 AGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGA 29595
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
||||| |||||||| ||| || |||| ||| | || || || || | || ||
Sbjct 29596 ATTCCCTCTTTGTCCTGAATCTTAGTCTTAACATTGTCAATAGTGTCTGAGCTCTCAACC 29655
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || ||||| || ||||||| ||| || |||||||||||||||
Sbjct 29656 TCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATTTGCATA 29703
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||||||| | | || || |||||||| || || ||||| || ||||||||
Sbjct 28792 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 28851
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | ||| | || || | || || || || | ||||| | ||| ||||| |||
Sbjct 28852 AGGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGA 28911
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| ||| ||| || ||| | || || || || | || ||
Sbjct 28912 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTCTCAACC 28971
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| || ||||||| ||| || ||||||||||||||
Sbjct 28972 TCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 29018
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| || || |||| | || | ||| ||||| || || || || || ||||||||
Sbjct 29248 CCTCCCCTTAATCGGAGCACAAGATGGAGGGTTGATTCCTTCTGGATATTGTAATCAGCA 29307
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | | || || | || || ||||| | ||||| | || || || ||
Sbjct 29308 AGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 29367
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
||||| || ||||| ||||||| |||| ||| | || || || ||| | || ||
Sbjct 29368 ATTCCCTCCTTGTCTTGAATTTTGGTCTTAACATTGTCAATAGTGTCGGAGCTCTCAACC 29427
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || ||||| || ||||||| ||| || |||||||||||||||
Sbjct 29428 TCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATTTGCATA 29475
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || || || || || || || ||||| || || || ||| | || ||
Sbjct 29950 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGTTCGGCCATCCTCG 30009
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||||| ||||| | |||| ||| || || || |||||||||||||| || |
Sbjct 30010 AGCTGTTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCTTTATCTTGA 30069
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| |||| ||| | || || ||||| | | || || || | || |||| ||
Sbjct 30070 ATTTTGGTCTTCACATTATCAATCGTATCAGAACTCTCGACCTCAAGAGTTATGGACTTG 30129
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| ||||||||||||||
Sbjct 30130 CCAGTTAGGGTTTTGACAAAAATTTGCAT 30158
>seq2834
Length=64598
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|||||||| || || || || |||||||| ||| || | | | | ||||| | |||
Sbjct 910 TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 851
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| || ||| | || | |||||||||||| ||| || ||||||||||| || |||
Sbjct 850 TTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTG 791
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|| ||| | || || || || ||| || |||| ||| ||||||||||| ||
Sbjct 790 GCTTTCACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTT 731
Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368
|| ||||| || || || ||||| ||||
Sbjct 730 AGGGTTTTCACGAAGATCTGCATTTTTG 703
>seq355
Length=215899
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||||||||| || || || |||||||| || | | | | | | || || || ||
Sbjct 205498 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCATCCTCCAACTGC 205439
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | ||||| | || ||||| |||||||||||| ||||| || ||
Sbjct 205438 TTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGTATCTTA 205379
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|||| ||| | || || ||||| | || || || ||||| |||||||| || |||
Sbjct 205378 GTCTTGACATTATCGATAGTATCTGAGCTCTCAACCTCCAAGGTGATGGTTTTCCCAGTC 205319
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
| ||||| ||||| ||||||||
Sbjct 205318 AAGGTTTTAACAAATATTTGCAT 205296
>seq51
Length=574565
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | | || || || ||||| || || ||||| |||||||||||
Sbjct 464393 CCACCTCTGAGGCGGAGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCC 464334
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | || | || || | || || ||||| | || | | || ||||| ||||
Sbjct 464333 AAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGA 464274
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || || || || ||| || |||| ||| | || || ||||| |||| ||
Sbjct 464273 ATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACT 464214
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||| ||| |||||||| || || ||||| || || ||||| ||||||
Sbjct 464213 TCTAGGGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATCTGCATA 464166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362129771367318
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