Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq51 100 2e-16
seq319 95.1 1e-14
seq6 89.7 4e-13
>seq51
Length=574565
Score = 100 bits (110), Expect = 2e-16
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||| | ||||| | ||||| |||||| ||||| ||||| |||||||||||||| |||
Sbjct 464165 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 464106
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | | || |||| ||| || || ||| | || || |||||||| || ||
Sbjct 464105 AATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGA 464046
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAG-GC--TC 18990
| ||||| ||||| ||| || ||| || || | ||| ||| | ||| || ||
Sbjct 464045 ATTCCCTCCTTGTCCTGAATCTT-TGTCTTAACGTTATCGATAGT---GTCAGAGCTTTC 463990
Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| | ||| |||||||| || || | ||| || || ||||| |||||
Sbjct 463989 AACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||||| || || |||||||| || |||||||| |||| || || | ||||||
Sbjct 464375 ACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCCTCC 464316
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
||||| || || ||| | |||| |||||||| || || | |||||| || || |
Sbjct 464315 AGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCTTGA 464256
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
|| ||| || || | | | | ||||| || ||| | ||| ||||||||
Sbjct 464255 ATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATGGTTTTC 464196
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||| || || ||||| |||||
Sbjct 464195 CCAGTAAGAGTCTTAACGAAAATCTGCAT 464167
>seq319
Length=213347
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||| | ||| | | ||||| ||| | || |||||||| || |||||||||||||
Sbjct 181226 TTCCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCG 181167
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | || | | || |||||||| || || ||| |||| | |||||||| || ||
Sbjct 181166 CAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 181107
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCC 18991
| | ||| || ||||| ||| ||| || || | | | | || || | || |||
Sbjct 181106 GGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCA 181048
Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|||| ||| ||||| || || || || || ||||| ||||| ||||||
Sbjct 181047 ACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 180997
>seq6
Length=1196388
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| || ||||||||||| || | || | ||||| ||||| || ||
Sbjct 29050 GTTGACTCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCGAGCTGCTTCCCA 29109
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || | ||||||||||| ||| | ||||| ||||| |||||| ||
Sbjct 29110 GCAAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAATTTTGGTCTTA 29169
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | ||| ||| ||| || | ||||| || || ||||||||||||
Sbjct 29170 ACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTT 29229
Query 19025 TTGACAAAAATTTGCAT 19041
|| ||||||||||||||
Sbjct 29230 TTCACAAAAATTTGCAT 29246
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/201 (70%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| || || |||||||| || | || | ||||| ||||| || ||
Sbjct 29734 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCA 29793
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | || | |||||||||||| ||| | || |||||||| ||| || ||
Sbjct 29794 GCAAAGATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCCTGAATCTTGGTCTTA 29853
Query 18965 ACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGTTTTACCTGTTAAA 19021
|| | | ||||||| | ||| || || || | |||||| ||||| ||||| |||
Sbjct 29854 ACATTGTCGACAGT---GTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAA 29910
Query 19022 GTTTTGACAAAAATTTGCATT 19042
|| || ||||| |||||||||
Sbjct 29911 GTCTTTACAAAGATTTGCATT 29931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414516220918012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |