Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq51 100 2e-16 seq319 95.1 1e-14 seq6 89.7 4e-13 >seq51 Length=574565 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||||| | ||||| |||||| ||||| ||||| |||||||||||||| ||| Sbjct 464165 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 464106 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| ||| || || ||| | || || |||||||| || || Sbjct 464105 AATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGA 464046 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAG-GC--TC 18990 | ||||| ||||| ||| || ||| || || | ||| ||| | ||| || || Sbjct 464045 ATTCCCTCCTTGTCCTGAATCTT-TGTCTTAACGTTATCGATAGT---GTCAGAGCTTTC 463990 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| || || | ||| || || ||||| ||||| Sbjct 463989 AACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || |||||||| || |||||||| |||| || || | |||||| Sbjct 464375 ACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCCTCC 464316 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | |||| |||||||| || || | |||||| || || | Sbjct 464315 AGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCTTGA 464256 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||| || || | | | | ||||| || ||| | ||| |||||||| Sbjct 464255 ATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATGGTTTTC 464196 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || || ||||| ||||| Sbjct 464195 CCAGTAAGAGTCTTAACGAAAATCTGCAT 464167 >seq319 Length=213347 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||| | | ||||| ||| | || |||||||| || ||||||||||||| Sbjct 181226 TTCCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCG 181167 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || |||||||| || || ||| |||| | |||||||| || || Sbjct 181166 CAAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 181107 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCC 18991 | | ||| || ||||| ||| ||| || || | | | | || || | || ||| Sbjct 181106 GGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCA 181048 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| ||||| || || || || || ||||| ||||| |||||| Sbjct 181047 ACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 180997 >seq6 Length=1196388 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || ||||||||||| || | || | ||||| ||||| || || Sbjct 29050 GTTGACTCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCGAGCTGCTTCCCA 29109 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | ||||||||||| ||| | ||||| ||||| |||||| || Sbjct 29110 GCAAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAATTTTGGTCTTA 29169 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||| ||| ||| || | ||||| || || |||||||||||| Sbjct 29170 ACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTT 29229 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||||||||| Sbjct 29230 TTCACAAAAATTTGCAT 29246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || |||||||| || | || | ||||| ||||| || || Sbjct 29734 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCA 29793 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||||||| ||| | || |||||||| ||| || || Sbjct 29794 GCAAAGATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCCTGAATCTTGGTCTTA 29853 Query 18965 ACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGTTTTACCTGTTAAA 19021 || | | ||||||| | ||| || || || | |||||| ||||| ||||| ||| Sbjct 29854 ACATTGTCGACAGT---GTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAA 29910 Query 19022 GTTTTGACAAAAATTTGCATT 19042 || || ||||| ||||||||| Sbjct 29911 GTCTTTACAAAGATTTGCATT 29931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414516220918012