Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq51 95.1 8e-15
seq6 84.2 1e-11
>seq51
Length=574565
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || || ||||| | ||||| ||||| || || || || || |||||||||||||
Sbjct 464166 ACCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGC 464107
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
||| | | |||||||| ||||| || ||| || | | |||||||| | ||
Sbjct 464106 CAATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGG 464047
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAA 33320
|| || || || || |||| ||| ||| ||| | || ||||| | || ||
Sbjct 464046 AATTCCCTCCTTGTCCTGAATC-TTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAA 463988
Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
| ||||| || || |||||||| || ||||| || |||||||| |||||
Sbjct 463987 CTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939
>seq6
Length=1196388
Score = 84.2 bits (92), Expect = 1e-11
Identities = 165/241 (68%), Gaps = 10/241 (4%)
Strand=Plus/Plus
Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192
||||| || || ||||| || |||| |||||| || | || ||||| ||||| |||||
Sbjct 28782 AATCTGCATCCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATT 28841
Query 33193 GTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248
|||||| | ||| | || ||||| | ||||| || ||| || || | ||
Sbjct 28842 GTAATCCG-CAA---GGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTT 28897
Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGT 33308
||||||||| || |||||||| || || |||| ||| || | | ||| ||||
Sbjct 28898 GCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTGACATTATCAATAGTGT 28957
Query 33309 CGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCA 33368
| | | ||| |||| ||| || || || || || | ||| || || ||||||||||
Sbjct 28958 CAGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCA 29017
Query 33369 T 33369
|
Sbjct 29018 T 29018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318734094627804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |