Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq51 95.1 8e-15 seq6 84.2 1e-11 >seq51 Length=574565 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || || ||||| | ||||| ||||| || || || || || ||||||||||||| Sbjct 464166 ACCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGC 464107 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | |||||||| ||||| || ||| || | | |||||||| | || Sbjct 464106 CAATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGG 464047 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAA 33320 || || || || || |||| ||| ||| ||| | || ||||| | || || Sbjct 464046 AATTCCCTCCTTGTCCTGAATC-TTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAA 463988 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | ||||| || || |||||||| || ||||| || |||||||| ||||| Sbjct 463987 CTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 463939 >seq6 Length=1196388 Score = 84.2 bits (92), Expect = 1e-11 Identities = 165/241 (68%), Gaps = 10/241 (4%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || |||| |||||| || | || ||||| ||||| ||||| Sbjct 28782 AATCTGCATCCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATT 28841 Query 33193 GTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248 |||||| | ||| | || ||||| | ||||| || ||| || || | || Sbjct 28842 GTAATCCG-CAA---GGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTT 28897 Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGT 33308 ||||||||| || |||||||| || || |||| ||| || | | ||| |||| Sbjct 28898 GCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTGACATTATCAATAGTGT 28957 Query 33309 CGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCA 33368 | | | ||| |||| ||| || || || || || | ||| || || |||||||||| Sbjct 28958 CAGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCA 29017 Query 33369 T 33369 | Sbjct 29018 T 29018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318734094627804