Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 >seq6 Length=1196388 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | |||||| || || || ||| ||||| ||||| ||||| Sbjct 28792 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCA 28851 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | || || || ||||| ||||||| |||||||||| |||| Sbjct 28852 AGGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGA 28911 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || || ||| || |||||| || ||| ||| || | ||| || Sbjct 28912 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGACATTATCAATAGTGTCAGAGCTCTCAACC 28971 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || |||||||| ||||| |||||||| Sbjct 28972 TCCAAAGTGATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 29018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354729181505304