Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq20 170 2e-37 seq3991 87.8 2e-12 >seq20 Length=765589 Score = 170 bits (188), Expect = 2e-37 Identities = 568/864 (66%), Gaps = 26/864 (3%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||| ||||| || | |||||| || ||||| || || || || ||| Sbjct 522477 GACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 522418 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAA--TAGTATTTTTTAC 12962 | | || || ||||| ||||||| || || | |||| || |||| || Sbjct 522417 TGAAGAGAGATCAACTCCATCCAATCGAACGGGTTCT--GAACTCCGTAAACCTTTTCAC 522360 Query 12963 ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC 13022 |||| | | | |||| ||||| ||||||||||| |||||||| |||| | |||| Sbjct 522359 ACCCAAGTGCAGCCAACAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCAC 522300 Query 13023 AGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAA 13082 ||||||| || | | || || || | || || |||| || | | || || || | Sbjct 522299 AGTTCATCCCAACCAGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGA 522240 Query 13083 CTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGAT--AG-ATGC 13138 |||| || | ||||| | || || ||||| | | || | | | || | || Sbjct 522239 CTGCATCCTTTACTATCCC-CTGC--ACCTTCTCAACACTCAGCTTCTTCTTCAGTAAGC 522183 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | | | || || |||||||||||||| | ||||| |||| ||| ||||||||| Sbjct 522182 TGTAT-AGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTT 522124 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT--AGCAGCAAACG 13256 || || |||| ||||||||| | ||| || ||||| | ||| || || ||||| |||| Sbjct 522123 GAGAAGGTTAAACCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAG-AAAC- 522066 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316 || || || || || |||||||| ||||| || |||||||| ||| || ||| Sbjct 522065 TTCCAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACG--- 522009 Query 13317 TATT-TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375 ||| || || ||||| ||||| | ||| || | ||||| || ||| Sbjct 522008 -ATTCAGCACCATCAATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATA 521950 Query 13376 TTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATC 13435 |||| ||||| ||| | || | || ||| ||| || ||||| |||| Sbjct 521949 GTTTCAATTGCACGAAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTA-A 521891 Query 13436 AATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 || ||| | |||||||| || ||||| ||||| || || |||||||| ||||| ||| Sbjct 521890 AAGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGC 521831 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | ||| || | |||||||| || |||||| | || | || ||| ||| || Sbjct 521830 GCGAGCTTCAGCAACCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGAT 521771 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAAT-AAAt--tttttttCGTTTTC 13611 ||||| || || || || || || ||||| | || |||| | || ||| | Sbjct 521770 GCCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGT 521711 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | | | || ||| | ||| ||||| || | ||| || || || | ||||| || Sbjct 521710 TAAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAA 521651 Query 13672 AGAAGCAACAGCCTTCTTATACAT 13695 ||||| |||| || || ||||| Sbjct 521650 TGAAGCTTCAGCTTTTTTGTACAT 521627 >seq3991 Length=39150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| |||||||||||||| | ||||||||||| ||| |||||||| || | |||| Sbjct 4555 ACAGGCAAAATCACAGTGTAGGCCTTCATCTCTTGATATAAGCTCGTTCGAGTAAGTTAA 4496 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| ||||| | |||| ||||||| ||||||||| ||| |||| Sbjct 4495 ACCAGGCATCATGCCTCTCTTTTTAAACCAAAATATGGCA-CAAA 4452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430923581407596