Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq51 100 2e-16 seq319 98.7 8e-16 >seq51 Length=574565 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 ||||| || || ||| ||||||||| |||||||| ||||| | || | || ||| Sbjct 463691 ACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCC 463632 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||||||| || | || | | |||||| ||| || | || ||||| ||| | Sbjct 463631 AACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGA 463572 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | | || || || | || |||| ||||| || ||||| || Sbjct 463571 ATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTTG 463512 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||||||||| || |||||| Sbjct 463511 CCAGTCAGGGTTTTCACAAAGATTTGCATC 463482 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||||||||||||||| ||| | ||||||| ||||| || | | Sbjct 464586 CTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAA 464527 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| || || | || ||||||||| ||| || ||| | | Sbjct 464526 GATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACATT 464467 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || ||||| | || ||| ||||| || || || || |||||||| || ||||| Sbjct 464466 CTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCAC 464407 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 464406 AAAGATCTGCAT 464395 >seq319 Length=213347 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| ||||| || ||| |||||| || |||||||| |||||| Sbjct 180996 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 180937 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| ||||||||||| || |||| || | |||||| || || Sbjct 180936 AAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 180877 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| ||| || ||| | | | ||||| |||| ||| | Sbjct 180876 ATACCTTCCTTGTCCTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACC 180817 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || ||||| || || || |||||||| Sbjct 180816 TCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| || ||||| || |||||| || || |||||||| || Sbjct 181224 CCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGC- 181166 Query 48560 AATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || || ||||||||||| ||| | |||| || | |||||| || || Sbjct 181165 AAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 181106 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| ||| ||||| | | ||||| || | ||| Sbjct 181105 GATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAAC 181046 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| | || || || ||||||||||| Sbjct 181045 CTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 180998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421193709479198