Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq51 100 2e-16
seq319 98.7 8e-16
>seq51
Length=574565
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
||||| || || ||| ||||||||| |||||||| ||||| | || | || |||
Sbjct 463691 ACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCC 463632
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
| ||||||||| || | || | | |||||| ||| || | || ||||| ||| |
Sbjct 463631 AACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGA 463572
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
||||| ||||| | | | || || || | || |||| ||||| || ||||| ||
Sbjct 463571 ATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTTG 463512
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| || || ||||||||||| || ||||||
Sbjct 463511 CCAGTCAGGGTTTTCACAAAGATTTGCATC 463482
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
||||||||||||||||||||||||||| ||| | ||||||| ||||| || | |
Sbjct 464586 CTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAA 464527
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | | |||||| || || | || ||||||||| ||| || ||| | |
Sbjct 464526 GATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACATT 464467
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| | || ||||| | || ||| ||||| || || || || |||||||| || |||||
Sbjct 464466 CTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCAC 464407
Query 48715 AAAAATCTGCAT 48726
||| ||||||||
Sbjct 464406 AAAGATCTGCAT 464395
>seq319
Length=213347
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| | ||| | | ||| ||||| || ||| |||||| || |||||||| ||||||
Sbjct 180996 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 180937
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| || | ||||| ||||||||||| || |||| || | |||||| || ||
Sbjct 180936 AAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 180877
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| || |||||||||| ||| || ||| | | | ||||| |||| ||| |
Sbjct 180876 ATACCTTCCTTGTCCTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACC 180817
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || || ||||| || || || ||||||||
Sbjct 180816 TCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTGACGAATATCTGCAT 180770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| | ||| | | ||| || ||||| || |||||| || || |||||||| ||
Sbjct 181224 CCTCCCCTCAAACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCCGC- 181166
Query 48560 AATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| ||| || || ||||||||||| ||| | |||| || | |||||| || ||
Sbjct 181165 AAGAGTCCTTCCATCTTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 181106
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| ||| ||| ||||| | | ||||| || | |||
Sbjct 181105 GATGCCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCAAC 181046
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || ||||| || ||||| | || || || |||||||||||
Sbjct 181045 CTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 180998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421193709479198
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |