Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq59 122 5e-23 seq386 116 2e-21 seq1283 113 2e-20 seq122 111 8e-20 seq300 109 3e-19 seq14 109 3e-19 seq2774 107 1e-18 seq399 107 1e-18 seq79 107 1e-18 seq1 105 3e-18 seq1375 100 1e-16 seq227 98.7 5e-16 >seq59 Length=543543 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||||| ||||||||||||| | || |||||||| ||||||| ||||||||| Sbjct 363547 AATTAAAAAAAAAA-AAATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTA 363605 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||||||||||||||||||| Sbjct 363606 GCACCACGCTCTAACCAACTGAGCTAATGGGCC 363638 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | ||||||||||| ||||||| ||||||||||||| || Sbjct 378712 AAAAAA--AAAATGGCCCATGCAGGGATCGAACCTGCGACCTTGGCGTTATTAGCACCAC 378769 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 378770 GCTCTAACCAGCTGAGCTAATGGGCC 378795 Score = 107 bits (118), Expect = 1e-18 Identities = 80/92 (87%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11441 AATAAAAAA--TCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| |||| | |||| ||||||||| | || |||||||| ||||||| |||||||||| Sbjct 378863 AATAGAAAACTTAAAATGTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAG 378922 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||| |||||||||||||||||||| Sbjct 378923 CACCACGCTCTAACCAACTGAGCTAATGGGCC 378954 >seq386 Length=197892 Score = 116 bits (128), Expect = 2e-21 Identities = 84/97 (87%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 || |||| | |||| ||||| |||||||| | ||||||||||| ||||||||||||| Sbjct 53464 AGGATTATTGAAAACAAAAATTTTGGCCCATGCAGGGATCGAACCTGCGACCTTCGCGTT 53405 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||| ||||||||||||||| Sbjct 53404 ATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 53368 >seq1283 Length=103335 Score = 113 bits (124), Expect = 2e-20 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||||||||||| | || |||||||| ||||||| ||||||||||||| || Sbjct 41134 AAAAATATAAATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 41075 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 41074 GCTCTAACCAACTGAGCTAATGGGCC 41049 Score = 111 bits (122), Expect = 8e-20 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||| | || |||||||| ||||||| ||||||||||||| || Sbjct 41270 AAAAAAT---ATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 41214 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 41213 GCTCTAACCAACTGAGCTAATGGGCC 41188 >seq122 Length=355675 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| || Sbjct 165837 AAATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 165896 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 165897 CAACTGAGCTAATGGGCC 165914 >seq300 Length=219910 Score = 109 bits (120), Expect = 3e-19 Identities = 81/95 (85%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||||| ||| || ||||||||| | | |||||||| ||||||||||||||| Sbjct 97285 AGAAGAAATAACAAA---AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 97229 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| ||||||||||||||| Sbjct 97228 TAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 97194 >seq14 Length=1067875 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| || Sbjct 248832 AAAATGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 248891 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| Sbjct 248892 CAACTGAGCTAATGGGCCG 248910 >seq2774 Length=58267 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 41119 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 41178 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 41179 GCTGAGCTAATGGGCC 41194 >seq399 Length=192752 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||||||||| ||| | | |||||||| ||||||||||||||||||||||| Sbjct 81189 TAAAAAA--AAATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 81132 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 81131 CGCTCTAACCAGCTGAGCTAATAGGCC 81105 >seq79 Length=493585 Score = 107 bits (118), Expect = 1e-18 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||||| |||| ||||||||| | | |||||||| |||||||||||||||||| Sbjct 315635 AATAAAAAAAAAAATGTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 315694 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||| |||||||||| |||| Sbjct 315695 CACGACGCTCTAACCAGCTGAGCTAATAGGCC 315726 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 66021 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 66080 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 66081 TGAGCTAATGGGCC 66094 >seq1 Length=1560229 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | ||| |||||||| | || |||||||| ||||||| |||||||||| || | Sbjct 1041593 TAAAAAACCTAAT-GGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGTACCA 1041651 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 1041652 CGCTCTAACCAACTGAGCTAATGGGCC 1041678 >seq1375 Length=102091 Score = 100 bits (110), Expect = 1e-16 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| || |||| |||| ||| | | |||||||| ||||||||||||||||||||| Sbjct 51281 AATAAATAAAAAAAT-GGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 51223 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 51222 GACGCTCTAACCAGCTGAGCTAATAGGCC 51194 >seq227 Length=263545 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| ||||||||| | | |||||||| |||||| ||||||||||||||| | Sbjct 90710 AAAATTTAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTCCGCGTTATTAGCACGGC 90651 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 90650 GCTCTAACCAGCTGAGCTAATGGGCC 90625 Lambda K H 0.639 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261455512825048