Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq59 122 5e-23
seq386 116 2e-21
seq1283 113 2e-20
seq122 111 8e-20
seq300 109 3e-19
seq14 109 3e-19
seq2774 107 1e-18
seq399 107 1e-18
seq79 107 1e-18
seq1 105 3e-18
seq1375 100 1e-16
seq227 98.7 5e-16
>seq59
Length=543543
Score = 122 bits (134), Expect = 5e-23
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||| |||||| ||||||||||||| | || |||||||| ||||||| |||||||||
Sbjct 363547 AATTAAAAAAAAAA-AAATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTA 363605
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||| ||||||||||||||||||||
Sbjct 363606 GCACCACGCTCTAACCAACTGAGCTAATGGGCC 363638
Score = 109 bits (120), Expect = 3e-19
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| ||| ||||||||| | ||||||||||| ||||||| ||||||||||||| ||
Sbjct 378712 AAAAAA--AAAATGGCCCATGCAGGGATCGAACCTGCGACCTTGGCGTTATTAGCACCAC 378769
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 378770 GCTCTAACCAGCTGAGCTAATGGGCC 378795
Score = 107 bits (118), Expect = 1e-18
Identities = 80/92 (87%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 11441 AATAAAAAA--TCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
|||| |||| | |||| ||||||||| | || |||||||| ||||||| ||||||||||
Sbjct 378863 AATAGAAAACTTAAAATGTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAG 378922
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||| ||||||||||||||||||||
Sbjct 378923 CACCACGCTCTAACCAACTGAGCTAATGGGCC 378954
>seq386
Length=197892
Score = 116 bits (128), Expect = 2e-21
Identities = 84/97 (87%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492
|| |||| | |||| ||||| |||||||| | ||||||||||| |||||||||||||
Sbjct 53464 AGGATTATTGAAAACAAAAATTTTGGCCCATGCAGGGATCGAACCTGCGACCTTCGCGTT 53405
Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||| |||| |||||||||||||||
Sbjct 53404 ATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 53368
>seq1283
Length=103335
Score = 113 bits (124), Expect = 2e-20
Identities = 77/86 (90%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11445 AAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| ||||||||||||| | || |||||||| ||||||| ||||||||||||| ||
Sbjct 41134 AAAAATATAAATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 41075
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 41074 GCTCTAACCAACTGAGCTAATGGGCC 41049
Score = 111 bits (122), Expect = 8e-20
Identities = 76/86 (88%), Gaps = 3/86 (3%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| ||||||||||| | || |||||||| ||||||| ||||||||||||| ||
Sbjct 41270 AAAAAAT---ATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 41214
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 41213 GCTCTAACCAACTGAGCTAATGGGCC 41188
>seq122
Length=355675
Score = 111 bits (122), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 165837 AAATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 165896
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 165897 CAACTGAGCTAATGGGCC 165914
>seq300
Length=219910
Score = 109 bits (120), Expect = 3e-19
Identities = 81/95 (85%), Gaps = 3/95 (3%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|||| ||||| ||| || ||||||||| | | |||||||| |||||||||||||||
Sbjct 97285 AGAAGAAATAACAAA---AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 97229
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| |||| |||||||||||||||
Sbjct 97228 TAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 97194
>seq14
Length=1067875
Score = 109 bits (120), Expect = 3e-19
Identities = 71/79 (90%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 248832 AAAATGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 248891
Query 11512 CAACTGAGCTAATGGGCCG 11530
|||||||||||||||||||
Sbjct 248892 CAACTGAGCTAATGGGCCG 248910
>seq2774
Length=58267
Score = 107 bits (118), Expect = 1e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 41119 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 41178
Query 11514 ACTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 41179 GCTGAGCTAATGGGCC 41194
>seq399
Length=192752
Score = 107 bits (118), Expect = 1e-18
Identities = 76/87 (87%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
||||||| ||||||||| ||| | | |||||||| |||||||||||||||||||||||
Sbjct 81189 TAAAAAA--AAATTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 81132
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| |||| |||||||||| ||||
Sbjct 81131 CGCTCTAACCAGCTGAGCTAATAGGCC 81105
>seq79
Length=493585
Score = 107 bits (118), Expect = 1e-18
Identities = 79/92 (86%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
||||||||| |||| ||||||||| | | |||||||| ||||||||||||||||||
Sbjct 315635 AATAAAAAAAAAAATGTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 315694
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||| |||| |||||||||| ||||
Sbjct 315695 CACGACGCTCTAACCAGCTGAGCTAATAGGCC 315726
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 66021 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 66080
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 66081 TGAGCTAATGGGCC 66094
>seq1
Length=1560229
Score = 105 bits (116), Expect = 3e-18
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
||||||| | ||| |||||||| | || |||||||| ||||||| |||||||||| || |
Sbjct 1041593 TAAAAAACCTAAT-GGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGTACCA 1041651
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||||||||
Sbjct 1041652 CGCTCTAACCAACTGAGCTAATGGGCC 1041678
>seq1375
Length=102091
Score = 100 bits (110), Expect = 1e-16
Identities = 76/89 (85%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||| || |||| |||| ||| | | |||||||| |||||||||||||||||||||
Sbjct 51281 AATAAATAAAAAAAT-GGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 51223
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||| ||||
Sbjct 51222 GACGCTCTAACCAGCTGAGCTAATAGGCC 51194
>seq227
Length=263545
Score = 98.7 bits (108), Expect = 5e-16
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| | ||| ||||||||| | | |||||||| |||||| ||||||||||||||| |
Sbjct 90710 AAAATTTAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTCCGCGTTATTAGCACGGC 90651
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 90650 GCTCTAACCAGCTGAGCTAATGGGCC 90625
Lambda K H
0.639 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261455512825048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |