Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq906 143 4e-30 seq9 138 2e-28 seq396 125 1e-24 seq347 107 3e-19 seq1474 102 1e-17 seq404 89.7 8e-14 >seq906 Length=129703 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | |||||| |||||||||||||| ||||| |||||||| || Sbjct 122411 CGCAAAGCGTCACAGGAAGGTTCTTCGTGATAACATCCAAGGTATCACTAAGCCAGCCAT 122352 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||||| | ||||| || |||||| | ||| | |||||||||| | Sbjct 122351 TCGTCGATTGGCTCGAAGAGGTGGTGTGAAGCGTATTAGTGGTCTTATCTATGAAGAAAC 122292 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | |||||||| || ||| || || | ||||||| | || || || Sbjct 122291 TCGTGGTGTTCTTAAGATCTTTCTAGAGAATGTGATTCGTGATGCTGTTACTTACACTGA 122232 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || | | |||||||| || | |||||| | |||||||| | || | || || Sbjct 122231 GCATGCCAGGAGGAAGACTGTTACTGCTATGGATGTTGTCTATGCTCTTAAGAGGCAGGG 122172 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || ||||| ||| |||| Sbjct 122171 TCGTACTCTCTACGGTTTCGGAGGTTA 122145 >seq9 Length=1038350 Score = 138 bits (152), Expect = 2e-28 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||||||||| ||||| ||||| ||||| Sbjct 599412 GCAAAGCGTCACAGGAAAGTTCTTCGTGATAACATCCAAGGTATCACTAAGCCTGCTATT 599353 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | || || || |||||| || || || |||||||||||| Sbjct 599352 CGTCGTCTTGCTCGAAGAGGCGGTGTTAAGCGTATCAGCGGTCTGATCTATGAAGAGACA 599293 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||||||| | ||| || || | ||||||| | || || ||| Sbjct 599292 CGTGGCGTCCTCAAGATCTTCTTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAG 599233 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | ||||| || || |||||||| | || ||||| | || | ||||| Sbjct 599232 CATGCGAGGAGGAAGACGGTGACTGCCATGGATGTTGTGTATGCTCTCAAGAGGCAAGGA 599173 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | |||||||||| || |||| Sbjct 599172 AGGACTCTTTATGGTTTCGGTGGTTA 599147 >seq396 Length=196008 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||| ||||| || || |||||||| |||||||| || || | Sbjct 73055 GAGACAACATTCAGGGTATCACTAAGCCCGCCATTCGTCGTCTTGCTCGTCGAGGCGGTG 72996 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || | |||||||||| | ||| | |||||||||||| || | Sbjct 72995 TTAAGAGGATCAGCGGCCTCATCTATGAAGAAACTCGCGGTGTTTTGAAGATATTTTTGG 72936 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| |||||| | || |||||||||||| |||||||| || || Sbjct 72935 AGAATGTCATCAGAGATGCTGTTACTTACACCGAGCACGCTCGCCGTAAGACGGTTACTG 72876 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || || || | || | |||||||||| |||| || ||||| ||| Sbjct 72875 CTATGGATGTTGTGTACGCTCTTAAGAGGCAAGGCCGTACTCTTTACGGATTTGGTGGTT 72816 Query 16698 AA 16699 || Sbjct 72815 AA 72814 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||| ||||| || || |||||||| |||||||| || || | Sbjct 88444 GAGACAACATTCAGGGTATCACTAAGCCCGCCATTCGTCGTCTTGCTCGTCGAGGCGGTG 88385 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || | |||||||||| | ||| | |||||||||||| || | Sbjct 88384 TTAAGAGGATCAGCGGCCTCATCTATGAAGAAACTCGCGGTGTTTTGAAGATATTTTTGG 88325 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| |||||| | || |||||||||||| |||||||| || || Sbjct 88324 AGAATGTCATCAGAGATGCTGTTACTTACACCGAGCACGCTCGCCGTAAGACGGTTACTG 88265 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || || || | || | |||||||||| |||| || ||||| ||| Sbjct 88264 CTATGGATGTTGTGTACGCTCTTAAGAGGCAAGGCCGTACTCTTTACGGATTTGGTGGTT 88205 Query 16698 AA 16699 || Sbjct 88204 AA 88203 >seq347 Length=211910 Score = 107 bits (118), Expect = 3e-19 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||| || || || || || || | ||||| || || || || Sbjct 82297 GATAACATTCAAGGTATCACTAAACCCGCCATTCGCCGGTTAGCTCGGCGAGGAGGGGTT 82356 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | ||| | | ||||| || | ||| | |||||||||||| ||| | || Sbjct 82357 AAGAGGATTAGTGGCCTTATTTATGAGGAAACTCGCGGTGTTTTGAAGATATTCTTGGAG 82416 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | |||||| |||||| | || || ||||| ||| |||||||| || || | Sbjct 82417 AATGTTATCAGAGATGCTGTTACTTACACTGAGCATGCTCGGCGTAAGACAGTTACTGCT 82476 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | |||||||||| ||||||| ||||| |||| Sbjct 82477 ATGGATGTTGTTTATGCTCTTAAGAGACAAGGCCGTACTCTTTATGGGTTTGGTGGTTA 82535 >seq1474 Length=98482 Score = 102 bits (112), Expect = 1e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| || || ||||| || || |||||| |||| | || || |||||| Sbjct 79629 GATAACATCCAAGGTATTACTAAGCCCGCCATTCGTCGTTTGGCGAGGCGAGGAGGAGTC 79688 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || | | || || || | ||||| ||| |||||||| || | || Sbjct 79689 AAGAGGATCAGCGGCCTTATTTACGAGGAAACTCGTGGTGTATTGAAGATATTTTTGGAG 79748 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| | || || ||||||||| ||||||||||| || | Sbjct 79749 AATGTGATTAGAGATGCTGTTACTTACACTGAGCACGCTCGCCGTAAGACTGTTACTGCT 79808 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | ||||| || | || | || ||||||| | || || ||||| |||| Sbjct 79809 ATGGATGTTGTCTACGCTCTTAAGAGGCAGGGCCGTACTCTCTACGGGTTTGGTGGTTA 79867 >seq404 Length=201987 Score = 89.7 bits (98), Expect = 8e-14 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||| || || || || ||||| | || | || |||||||| Sbjct 103122 GATAACATTCAAGGTATCACTAAACCCGCCATTCGTCGCTTAGCGAGGCGAGGTGGAGTT 103063 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || | | || || || | ||| | |||||||||||| || | || Sbjct 103062 AAGAGGATCAGCGGCCTTATTTACGAGGAAACTCGCGGTGTTTTGAAGATATTTTTGGAG 103003 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| | || || ||||| ||| ||||||||||| || | Sbjct 103002 AATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCTCGTCGTAAGACTGTTACTGCT 102943 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | || ||||||| | || || ||||| |||| Sbjct 102942 ATGGATGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTCTACGGGTTTGGTGGTTA 102884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064961590214