Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq906 143 4e-30
seq9 138 2e-28
seq396 125 1e-24
seq347 107 3e-19
seq1474 102 1e-17
seq404 89.7 8e-14
>seq906
Length=129703
Score = 143 bits (158), Expect = 4e-30
Identities = 192/267 (72%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| | | |||||| |||||||||||||| ||||| |||||||| ||
Sbjct 122411 CGCAAAGCGTCACAGGAAGGTTCTTCGTGATAACATCCAAGGTATCACTAAGCCAGCCAT 122352
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| ||||||| | ||||| || |||||| | ||| | |||||||||| |
Sbjct 122351 TCGTCGATTGGCTCGAAGAGGTGGTGTGAAGCGTATTAGTGGTCTTATCTATGAAGAAAC 122292
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||||| |||| | |||||||| || ||| || || | ||||||| | || || ||
Sbjct 122291 TCGTGGTGTTCTTAAGATCTTTCTAGAGAATGTGATTCGTGATGCTGTTACTTACACTGA 122232
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || | | |||||||| || | |||||| | |||||||| | || | || ||
Sbjct 122231 GCATGCCAGGAGGAAGACTGTTACTGCTATGGATGTTGTCTATGCTCTTAAGAGGCAGGG 122172
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698
|||| | || ||||| ||| ||||
Sbjct 122171 TCGTACTCTCTACGGTTTCGGAGGTTA 122145
>seq9
Length=1038350
Score = 138 bits (152), Expect = 2e-28
Identities = 190/266 (71%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | |||||| |||||||||||||| ||||| ||||| |||||
Sbjct 599412 GCAAAGCGTCACAGGAAAGTTCTTCGTGATAACATCCAAGGTATCACTAAGCCTGCTATT 599353
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||||| | || || || |||||| || || || ||||||||||||
Sbjct 599352 CGTCGTCTTGCTCGAAGAGGCGGTGTTAAGCGTATCAGCGGTCTGATCTATGAAGAGACA 599293
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | ||||||||| | ||| || || | ||||||| | || || |||
Sbjct 599292 CGTGGCGTCCTCAAGATCTTCTTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAG 599233
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || | | ||||| || || |||||||| | || ||||| | || | |||||
Sbjct 599232 CATGCGAGGAGGAAGACGGTGACTGCCATGGATGTTGTGTATGCTCTCAAGAGGCAAGGA 599173
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698
| | |||||||||| || ||||
Sbjct 599172 AGGACTCTTTATGGTTTCGGTGGTTA 599147
>seq396
Length=196008
Score = 125 bits (138), Expect = 1e-24
Identities = 173/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||| || || ||||| ||||| || || |||||||| |||||||| || || |
Sbjct 73055 GAGACAACATTCAGGGTATCACTAAGCCCGCCATTCGTCGTCTTGCTCGTCGAGGCGGTG 72996
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| ||| | || || | |||||||||| | ||| | |||||||||||| || |
Sbjct 72995 TTAAGAGGATCAGCGGCCTCATCTATGAAGAAACTCGCGGTGTTTTGAAGATATTTTTGG 72936
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || ||| |||||| | || |||||||||||| |||||||| || ||
Sbjct 72935 AGAATGTCATCAGAGATGCTGTTACTTACACCGAGCACGCTCGCCGTAAGACGGTTACTG 72876
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| | || || || | || | |||||||||| |||| || ||||| |||
Sbjct 72875 CTATGGATGTTGTGTACGCTCTTAAGAGGCAAGGCCGTACTCTTTACGGATTTGGTGGTT 72816
Query 16698 AA 16699
||
Sbjct 72815 AA 72814
Score = 125 bits (138), Expect = 1e-24
Identities = 173/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||| || || ||||| ||||| || || |||||||| |||||||| || || |
Sbjct 88444 GAGACAACATTCAGGGTATCACTAAGCCCGCCATTCGTCGTCTTGCTCGTCGAGGCGGTG 88385
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| ||| | || || | |||||||||| | ||| | |||||||||||| || |
Sbjct 88384 TTAAGAGGATCAGCGGCCTCATCTATGAAGAAACTCGCGGTGTTTTGAAGATATTTTTGG 88325
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || ||| |||||| | || |||||||||||| |||||||| || ||
Sbjct 88324 AGAATGTCATCAGAGATGCTGTTACTTACACCGAGCACGCTCGCCGTAAGACGGTTACTG 88265
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| | || || || | || | |||||||||| |||| || ||||| |||
Sbjct 88264 CTATGGATGTTGTGTACGCTCTTAAGAGGCAAGGCCGTACTCTTTACGGATTTGGTGGTT 88205
Query 16698 AA 16699
||
Sbjct 88204 AA 88203
>seq347
Length=211910
Score = 107 bits (118), Expect = 3e-19
Identities = 167/239 (70%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| ||||| ||||| || || || || || || | ||||| || || || ||
Sbjct 82297 GATAACATTCAAGGTATCACTAAACCCGCCATTCGCCGGTTAGCTCGGCGAGGAGGGGTT 82356
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||| | | ||| | | ||||| || | ||| | |||||||||||| ||| | ||
Sbjct 82357 AAGAGGATTAGTGGCCTTATTTATGAGGAAACTCGCGGTGTTTTGAAGATATTCTTGGAG 82416
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| |||||| |||||| | || || ||||| ||| |||||||| || || |
Sbjct 82417 AATGTTATCAGAGATGCTGTTACTTACACTGAGCATGCTCGGCGTAAGACAGTTACTGCT 82476
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|||||| | || ||||| | || | |||||||||| ||||||| ||||| ||||
Sbjct 82477 ATGGATGTTGTTTATGCTCTTAAGAGACAAGGCCGTACTCTTTATGGGTTTGGTGGTTA 82535
>seq1474
Length=98482
Score = 102 bits (112), Expect = 1e-17
Identities = 166/239 (69%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||||||||| || || ||||| || || |||||| |||| | || || ||||||
Sbjct 79629 GATAACATCCAAGGTATTACTAAGCCCGCCATTCGTCGTTTGGCGAGGCGAGGAGGAGTC 79688
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||| | || || | | || || || | ||||| ||| |||||||| || | ||
Sbjct 79689 AAGAGGATCAGCGGCCTTATTTACGAGGAAACTCGTGGTGTATTGAAGATATTTTTGGAG 79748
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || || |||||| | || || ||||||||| ||||||||||| || |
Sbjct 79749 AATGTGATTAGAGATGCTGTTACTTACACTGAGCACGCTCGCCGTAAGACTGTTACTGCT 79808
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|||||| | ||||| || | || | || ||||||| | || || ||||| ||||
Sbjct 79809 ATGGATGTTGTCTACGCTCTTAAGAGGCAGGGCCGTACTCTCTACGGGTTTGGTGGTTA 79867
>seq404
Length=201987
Score = 89.7 bits (98), Expect = 8e-14
Identities = 163/239 (68%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| ||||| ||||| || || || || ||||| | || | || ||||||||
Sbjct 103122 GATAACATTCAAGGTATCACTAAACCCGCCATTCGTCGCTTAGCGAGGCGAGGTGGAGTT 103063
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||| | || || | | || || || | ||| | |||||||||||| || | ||
Sbjct 103062 AAGAGGATCAGCGGCCTTATTTACGAGGAAACTCGCGGTGTTTTGAAGATATTTTTGGAG 103003
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || || |||||| | || || ||||| ||| ||||||||||| || |
Sbjct 103002 AATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCTCGTCGTAAGACTGTTACTGCT 102943
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|||||| | |||||||| | || | || ||||||| | || || ||||| ||||
Sbjct 102942 ATGGATGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTCTACGGGTTTGGTGGTTA 102884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79064961590214
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |