Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq371 102 1e-16 seq393 100 5e-16 >seq371 Length=200744 Score = 102 bits (112), Expect = 1e-16 Identities = 251/369 (68%), Gaps = 24/369 (7%) Strand=Plus/Minus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 ||| ||| | ||||| | |||||||||||||| || || || || || ||| || Sbjct 7640 GAAGCCTAAATATGTTATACTTGCTGCTGCTAAAGTTGGGGGAATCCATGCTAATAACAC 7581 Query 194643 CTATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCT 194700 || |||||||||||||| | || || || |||||| || ||||| || | || Sbjct 7580 TTACCCTGCCGATTTCATTGCCAT--TAACCTTCAGATTCAAACCAATGTCATCCA--CT 7525 Query 194701 GCATATCGTA---ATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCT 194757 ||| | | |||| || | ||||| | ||||| || || || ||||| || ||| Sbjct 7524 -CATCTTTCACCCATGGTGTCGAAAAACTCCTCTTTCTTGGCTCCTCCTGCATTTACCCT 7466 Query 194758 AAGTTTCCAAAGATACCTATTACAGAGGATCAGTTACTT---GCTAGTCCTTTGGAAGAA 194814 |||||| | ||| || || || ||| | |||| || ||||||||||| Sbjct 7465 AAGTTTGCTCCTCAACCAATCACGGA--ATCTG-CACTTTTAACTGGTCCTTTGGAACCC 7409 Query 194815 TCTAAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG 194873 | ||| |||| ||||| ||||| || || ||||| || | |||||| ||||| ||||| Sbjct 7408 ACCAATGAGTG-GTATGCCATTGCTAAAATTGCAGGAATCAAGATGTGCCAAGCTTATCG 7350 Query 194874 ---TCAGCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAA 194930 ||| || || | ||||| | || ||||| |||||| |||| || ||||| Sbjct 7349 AATTCAACATAAT---TGGGATGCAGTTTCTGGTATGCCCACTAATTTATATGGCCCTAA 7293 Query 194931 TGATAATTT 194939 ||| ||||| Sbjct 7292 TGACAATTT 7284 >seq393 Length=207367 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193947 GGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATT 194006 || ||| | ||||| || ||||| ||| |||| || |||| ||||| ||||||||||| Sbjct 89357 GGCATTTTATTCAACCATGAATCACCACGAAGGGGAGAGAACTTTGTGACTCGTAAGATC 89298 Query 194007 ACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTT 194066 |||| | | | | ||| |||| | |||| | |||| || |||||| | Sbjct 89297 ACACGTGCTGTTGGCAGAATCAAGATTGGGCTTCAGAGCAAGCTTTTCCTGGGTAATTTG 89238 Query 194067 AATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTG 194126 | || ||||| |||||| ||| || ||||||||||| |||||| | ||| | Sbjct 89237 CAAGCCTCAAGGGACTGGGGATTTGCAGGAGACTATGTTGAAGCAATGTGGATGATGCTT 89178 Query 194127 CAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||||||| | |||||||| |||||| | ||||| Sbjct 89177 CAACAGGAAAAGCCCGATGACTATGTGGTGGCTAC 89143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807442162460880