Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq371 102 1e-16
seq393 100 5e-16
>seq371
Length=200744
Score = 102 bits (112), Expect = 1e-16
Identities = 251/369 (68%), Gaps = 24/369 (7%)
Strand=Plus/Minus
Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642
||| ||| | ||||| | |||||||||||||| || || || || || ||| ||
Sbjct 7640 GAAGCCTAAATATGTTATACTTGCTGCTGCTAAAGTTGGGGGAATCCATGCTAATAACAC 7581
Query 194643 CTATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCT 194700
|| |||||||||||||| | || || || |||||| || ||||| || | ||
Sbjct 7580 TTACCCTGCCGATTTCATTGCCAT--TAACCTTCAGATTCAAACCAATGTCATCCA--CT 7525
Query 194701 GCATATCGTA---ATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCT 194757
||| | | |||| || | ||||| | ||||| || || || ||||| || |||
Sbjct 7524 -CATCTTTCACCCATGGTGTCGAAAAACTCCTCTTTCTTGGCTCCTCCTGCATTTACCCT 7466
Query 194758 AAGTTTCCAAAGATACCTATTACAGAGGATCAGTTACTT---GCTAGTCCTTTGGAAGAA 194814
|||||| | ||| || || || ||| | |||| || |||||||||||
Sbjct 7465 AAGTTTGCTCCTCAACCAATCACGGA--ATCTG-CACTTTTAACTGGTCCTTTGGAACCC 7409
Query 194815 TCTAAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG 194873
| ||| |||| ||||| ||||| || || ||||| || | |||||| ||||| |||||
Sbjct 7408 ACCAATGAGTG-GTATGCCATTGCTAAAATTGCAGGAATCAAGATGTGCCAAGCTTATCG 7350
Query 194874 ---TCAGCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAA 194930
||| || || | ||||| | || ||||| |||||| |||| || |||||
Sbjct 7349 AATTCAACATAAT---TGGGATGCAGTTTCTGGTATGCCCACTAATTTATATGGCCCTAA 7293
Query 194931 TGATAATTT 194939
||| |||||
Sbjct 7292 TGACAATTT 7284
>seq393
Length=207367
Score = 100 bits (110), Expect = 5e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193947 GGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATT 194006
|| ||| | ||||| || ||||| ||| |||| || |||| ||||| |||||||||||
Sbjct 89357 GGCATTTTATTCAACCATGAATCACCACGAAGGGGAGAGAACTTTGTGACTCGTAAGATC 89298
Query 194007 ACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTT 194066
|||| | | | | ||| |||| | |||| | |||| || |||||| |
Sbjct 89297 ACACGTGCTGTTGGCAGAATCAAGATTGGGCTTCAGAGCAAGCTTTTCCTGGGTAATTTG 89238
Query 194067 AATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTG 194126
| || ||||| |||||| ||| || ||||||||||| |||||| | ||| |
Sbjct 89237 CAAGCCTCAAGGGACTGGGGATTTGCAGGAGACTATGTTGAAGCAATGTGGATGATGCTT 89178
Query 194127 CAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161
|||||||| | |||||||| |||||| | |||||
Sbjct 89177 CAACAGGAAAAGCCCGATGACTATGTGGTGGCTAC 89143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807442162460880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |