Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq20 210 3e-49 >seq20 Length=765589 Score = 210 bits (232), Expect = 3e-49 Identities = 410/601 (68%), Gaps = 11/601 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || ||||| ||||| || || ||||||| || || ||||| || || || | Sbjct 522171 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTGAGAAGGTTAAA 522112 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| ||||||||||| ||||| || ||||| ||| |||||| ||||| Sbjct 522111 CCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAA 522052 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATG 33479 || ||||| || |||||| ||||| | ||||| || ||| | || | ||| Sbjct 522051 ATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCA-AACGATTCAGCACCATCA-- 521995 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| |||||||||| |||||||| || |||||||| || ||||| || ||| Sbjct 521994 -ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 521936 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||| |||| | | || ||| |||||| | ||||| || | | |||| ||||| Sbjct 521935 AAAAAGATGGGTCTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACAT 521876 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| || ||||||||||||||||| || || || || |||||| | ||| || | || Sbjct 521875 TTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAAC 521816 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || | |||| | | || | ||| || || || ||||| || || Sbjct 521815 CTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGC 521756 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT--TATTCCA 33776 || || || | | || | || |||| | |||||| | ||| || | | | ||| Sbjct 521755 GAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCA 521696 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | | | ||||| || | ||| |||||||| | ||||| ||||| || || || || Sbjct 521695 GTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTT 521636 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| ||||| | |||||| | |||| |||||||| ||| ||||||| ||| || Sbjct 521635 TTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTT 521576 Query 33897 T 33897 | Sbjct 521575 T 521575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622860002965680