Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq843 107 2e-18
seq2834 98.7 1e-15
seq1427 98.7 1e-15
seq338 95.1 1e-14
seq319 87.8 2e-12
>seq843
Length=130910
Score = 107 bits (118), Expect = 2e-18
Identities = 165/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| ||||||| ||| | || ||| | ||| | ||||||
Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||| ||||| | |||||| ||||| ||||||||||| || || || |||
Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGT-CAGCGACT 26943
|||||| | | || | | || |||||| | ||||||| |||| || | || || |
Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 120304
Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
| |||||||| || ||||| || | |||||||| || ||||| | || ||
Sbjct 120305 ACAACATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGGGGG 120356
>seq2834
Length=64598
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|||||||| | || || ||||| |||| || ||| | || ||| | ||| | |||||
Sbjct 705 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 764
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||| ||||| | || ||| ||||| ||||||||||| || || |||||
Sbjct 765 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCCGAC 824
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944
|||||| | ||||| | || ||| ||||| |||||||||| | || | || ||||||
Sbjct 825 CAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 883
Query 26945 TAACATTCAAAAAGAATCTAC 26965
||||| || || || || ||
Sbjct 884 CAACATCCAGAAGGAGTCAAC 904
>seq1427
Length=108667
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|||||||| | || || ||||| |||| || ||| | || ||| | || | |||||
Sbjct 17598 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 17657
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||| |||||||| | |||||| ||||| ||||||||||| || || || ||
Sbjct 17658 TCCGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 17717
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944
|||||| | ||||| | || ||| ||||| |||||||||| | || | || ||||||
Sbjct 17718 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 17776
Query 26945 TAACATTCAAAAAGAATCTAC 26965
||||| || || || || ||
Sbjct 17777 CAACATCCAGAAGGAGTCCAC 17797
>seq338
Length=211836
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/164 (73%), Gaps = 1/164 (1%)
Strand=Plus/Minus
Query 26761 CAAACAAAA-TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819
||||||||| ||||| | ||||| ||||| | || || ||| | |||||| | || |
Sbjct 171497 CAAACAAAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTT 171438
Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879
||||| | ||||||||| | | ||||| || ||| ||||||||||| || |
Sbjct 171437 GAATCTAGTGACACCATCAACAATGTCAAGGCTAAAATTCATGACAAAGAAGGCATTCAA 171378
Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923
||||||||||| | ||||| | || ||| || ||||| |||||
Sbjct 171377 CCCGATCAACAGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGA 171334
>seq319
Length=213347
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || | |||||||| | ||||| |||| | || |
Sbjct 180086 ATGCAAATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 180145
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | ||||| ||||| ||||| |||||||| || || || ||
Sbjct 180146 GACACCATTGACAATGTCAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCAG 180205
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
||||| || || | || ||| ||||| || || || | ||| | | ||| ||||| ||
Sbjct 180206 CAAAGGCTGATCTTCGCCGGAAAACAGCTAGAGGACGGCCGAACCCT-AGCTGACTACAA 180264
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
||||||||| || || ||| | || || || || | || || |||||||
Sbjct 180265 CATTCAAAAGGAGTCAACTCTTCACCTTGTGCTCCGTCTCAGGGGAGGAA 180314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478595399230560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |