Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq843 107 2e-18 seq2834 98.7 1e-15 seq1427 98.7 1e-15 seq338 95.1 1e-14 seq319 87.8 2e-12 >seq843 Length=130910 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| ||||||| ||| | || ||| | ||| | |||||| Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | |||||| ||||| ||||||||||| || || || ||| Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGT-CAGCGACT 26943 |||||| | | || | | || |||||| | ||||||| |||| || | || || | Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 120304 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | |||||||| || ||||| || | |||||||| || ||||| | || || Sbjct 120305 ACAACATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGGGGG 120356 >seq2834 Length=64598 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || ||| | || ||| | ||| | ||||| Sbjct 705 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 764 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | || ||| ||||| ||||||||||| || || ||||| Sbjct 765 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCCGAC 824 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944 |||||| | ||||| | || ||| ||||| |||||||||| | || | || |||||| Sbjct 825 CAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 883 Query 26945 TAACATTCAAAAAGAATCTAC 26965 ||||| || || || || || Sbjct 884 CAACATCCAGAAGGAGTCAAC 904 >seq1427 Length=108667 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || ||| | || ||| | || | ||||| Sbjct 17598 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 17657 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||| |||||||| | |||||| ||||| ||||||||||| || || || || Sbjct 17658 TCCGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 17717 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944 |||||| | ||||| | || ||| ||||| |||||||||| | || | || |||||| Sbjct 17718 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 17776 Query 26945 TAACATTCAAAAAGAATCTAC 26965 ||||| || || || || || Sbjct 17777 CAACATCCAGAAGGAGTCCAC 17797 >seq338 Length=211836 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 26761 CAAACAAAA-TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 ||||||||| ||||| | ||||| ||||| | || || ||| | |||||| | || | Sbjct 171497 CAAACAAAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTT 171438 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 ||||| | ||||||||| | | ||||| || ||| ||||||||||| || | Sbjct 171437 GAATCTAGTGACACCATCAACAATGTCAAGGCTAAAATTCATGACAAAGAAGGCATTCAA 171378 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 ||||||||||| | ||||| | || ||| || ||||| ||||| Sbjct 171377 CCCGATCAACAGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGA 171334 >seq319 Length=213347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | ||||| |||| | || | Sbjct 180086 ATGCAAATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 180145 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||| |||||||| || || || || Sbjct 180146 GACACCATTGACAATGTCAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCAG 180205 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| || || | || ||| ||||| || || || | ||| | | ||| ||||| || Sbjct 180206 CAAAGGCTGATCTTCGCCGGAAAACAGCTAGAGGACGGCCGAACCCT-AGCTGACTACAA 180264 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || ||| | || || || || | || || ||||||| Sbjct 180265 CATTCAAAAGGAGTCAACTCTTCACCTTGTGCTCCGTCTCAGGGGAGGAA 180314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478595399230560