Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq20 118 3e-21 >seq20 Length=765589 Score = 118 bits (130), Expect = 3e-21 Identities = 349/535 (65%), Gaps = 11/535 (2%) Strand=Plus/Plus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAAC 22492 ||||||| |||||||||||||| || ||||| | || || || || || Sbjct 521961 TTAAGAAGAAGGCAGATTGGGCTCTTCGTTGGATTGATGGTGCTGAATCGTTTGCTGAGA 522020 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | | ||||| |||||| |||||||| |||||||| |||||| || || | |||| Sbjct 522021 GGTTGATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTCCATCT 522080 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| ||||| |||| | ||||||||| |||| || ||||| ||| | || | Sbjct 522081 TCTGGCTCAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCAAACGAGCTGATATCGC 522140 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATA-TCATTCAT 22671 |||| || || ||||| |||||||| || ||||||| | | || | | | Sbjct 522141 GAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTGCTATA----CAGCTTACTGAAGAAG 522196 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 || || ||| | || | | || | | ||||||| ||| | || || Sbjct 522197 AAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTAAAGGATGCAGTCGAAATCGAGCGAGAG 522256 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 || | ||| ||| | || || | || |||| || || || ||||| Sbjct 522257 TTCGTAACCGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGCCAG 522316 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || ||| | ||||||||||| | || || | |||| || | || |||| || || Sbjct 522317 TACATTGAGTTTGTTGCAGACAGGCTGTTGGCTGCACTTGGGTGTGAAAAGGTTT---AC 522373 Query 22852 GTCGTT---AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 | ||| || || || || |||||||| | || || ||| |||| ||||| |||||| Sbjct 522374 GGAGTTCAGAACCCGTTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTC 522433 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATG 22963 || || || |||||||| || || || ||||| ||||||| | ||||||| Sbjct 522434 TTTGAGAAGAGAGTTGGGGAGTATCAGAAAGCTTCTGTTATGTCTAGCTTGAATG 522488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303166602156836