Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq338 98.7 9e-16
seq2834 96.9 3e-15
seq1427 96.9 3e-15
seq843 95.1 1e-14
seq6 91.5 1e-13
>seq338
Length=211836
Score = 98.7 bits (108), Expect = 9e-16
Identities = 142/199 (71%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 23983 CAAACAAAA-TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041
||||||||| ||||| | ||||| ||||| | || || ||| | || ||| | || ||
Sbjct 171497 CAAACAAAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTT 171438
Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101
|| | | ||||||||| | | ||||| || ||| |||||||||||||| |
Sbjct 171437 GAATCTAGTGACACCATCAACAATGTCAAGGCTAAAATTCATGACAAAGAAGGCATTCAA 171378
Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161
|||||||||||| | || || | || ||| |||||||| ||||| || | | | |
Sbjct 171377 CCCGATCAACAGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGACAACCGTACTCTAGCC 171318
Query 24162 GATTATAACATTCAAAAAG 24180
||||| ||||| || ||||
Sbjct 171317 GATTACAACATCCAGAAAG 171299
>seq2834
Length=64598
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|||||||| | || || ||||| |||| || ||| | || ||| | |||||||| ||
Sbjct 705 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 764
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
||||| ||||| | || ||| ||||| |||||||||||||| || |||||
Sbjct 765 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCCGAC 824
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166
||||| | || || | || ||| || || |||||||||| | | || | || ||| ||
Sbjct 825 CAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 883
Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193
||||| || || || || || ||||
Sbjct 884 CAACATCCAGAAGGAGTCAACCCTTCA 910
>seq1427
Length=108667
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|||||||| | || || ||||| |||| || ||| | || ||| | || ||||| ||
Sbjct 17598 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 17657
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
||| |||||||| | |||||| ||||| |||||||||||||| || || ||
Sbjct 17658 TCCGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 17717
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166
||||| | || || | || ||| || || |||||||||| | | || | || ||| ||
Sbjct 17718 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 17776
Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193
||||| || || || || || ||||
Sbjct 17777 CAACATCCAGAAGGAGTCCACCCTTCA 17803
>seq843
Length=130910
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| ||||||| ||| | || ||| | |||||||| |
Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
||||| ||||| | |||||| ||||| |||||||||||||| || || |||
Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGT-CAGCGATT 24165
||||| | | || | | || || ||| | ||||||| |||| || | || ||||
Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 120304
Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
| |||||||| || ||||| || ||||| | |||
Sbjct 120305 ACAACATTCAGAAGGAATCGACGCTTCATCTGGTG 120339
>seq6
Length=1196388
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || || || || || || | || || | || || ||| |
Sbjct 29019 AATGCAAATTTTTGTTAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTC 28960
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| || || | |||||| |||||| ||||| |||||||| ||||| || ||
Sbjct 28959 TGACACTATTGATAATGTCAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCA 28900
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
|| || |||| | | ||| ||||| || || |||| || | | | ||||| ||
Sbjct 28899 GCAAAGGTTGATCTTTGCCGGGAAGCAGCTTGATGATGGGAGGACCCTTGCGGATTACAA 28840
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|| ||||| || ||||| |||| || ||| | | |||||||||||
Sbjct 28839 TATCCAAAAGGAGTCTACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 28792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429877324215690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |