Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq338 98.7 9e-16 seq2834 96.9 3e-15 seq1427 96.9 3e-15 seq843 95.1 1e-14 seq6 91.5 1e-13 >seq338 Length=211836 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 23983 CAAACAAAA-TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||||||||| ||||| | ||||| ||||| | || || ||| | || ||| | || || Sbjct 171497 CAAACAAAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTT 171438 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 || | | ||||||||| | | ||||| || ||| |||||||||||||| | Sbjct 171437 GAATCTAGTGACACCATCAACAATGTCAAGGCTAAAATTCATGACAAAGAAGGCATTCAA 171378 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 |||||||||||| | || || | || ||| |||||||| ||||| || | | | | Sbjct 171377 CCCGATCAACAGCGCCTCATCTTCGCCGGAAAGCAACTTGAAGACAACCGTACTCTAGCC 171318 Query 24162 GATTATAACATTCAAAAAG 24180 ||||| ||||| || |||| Sbjct 171317 GATTACAACATCCAGAAAG 171299 >seq2834 Length=64598 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || ||| | |||||||| || Sbjct 705 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 764 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | || ||| ||||| |||||||||||||| || ||||| Sbjct 765 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCCGAC 824 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166 ||||| | || || | || ||| || || |||||||||| | | || | || ||| || Sbjct 825 CAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 883 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 884 CAACATCCAGAAGGAGTCAACCCTTCA 910 >seq1427 Length=108667 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || ||| | || ||||| || Sbjct 17598 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 17657 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||| |||||||| | |||||| ||||| |||||||||||||| || || || Sbjct 17658 TCCGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 17717 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166 ||||| | || || | || ||| || || |||||||||| | | || | || ||| || Sbjct 17718 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 17776 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 17777 CAACATCCAGAAGGAGTCCACCCTTCA 17803 >seq843 Length=130910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| ||||||| ||| | || ||| | |||||||| | Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | |||||| ||||| |||||||||||||| || || ||| Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGT-CAGCGATT 24165 ||||| | | || | | || || ||| | ||||||| |||| || | || |||| Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 120304 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | |||||||| || ||||| || ||||| | ||| Sbjct 120305 ACAACATTCAGAAGGAATCGACGCTTCATCTGGTG 120339 >seq6 Length=1196388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || || | || || | || || ||| | Sbjct 29019 AATGCAAATTTTTGTTAAGACTTTGACAGGGAAGACCATCACTTTGGAGGTTGAGAGCTC 28960 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | |||||| |||||| ||||| |||||||| ||||| || || Sbjct 28959 TGACACTATTGATAATGTCAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCA 28900 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||| | | ||| ||||| || || |||| || | | | ||||| || Sbjct 28899 GCAAAGGTTGATCTTTGCCGGGAAGCAGCTTGATGATGGGAGGACCCTTGCGGATTACAA 28840 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || ||||| |||| || ||| | | ||||||||||| Sbjct 28839 TATCCAAAAGGAGTCTACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 28792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429877324215690