Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq51 96.9 3e-15
seq319 93.3 3e-14
seq2834 82.4 6e-11
>seq51
Length=574565
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || |||||||||||||| ||||||||||| || | ||| || | || ||||| ||
Sbjct 463685 TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCCAACTGC 463626
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || || | || |||| ||| |||||| || | ||||| || || |||||
Sbjct 463625 TTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATTTTG 463566
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
||| || | | | |||||| | |||| || | ||||||||| || || |||
Sbjct 463565 GTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTC 463506
Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935
|| ||||| ||||| || |||||
Sbjct 463505 AGGGTTTTCACAAAGATTTGCAT 463483
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| || || |||||||| |||||||| || |||| || || | |||
Sbjct 464378 AGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCC 464319
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| || || || ||| | |||| || ||| ||||| || | |||||| || ||
Sbjct 464318 TCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCT 464259
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | | |||||| | | | | || || | || ||| | ||||||||||
Sbjct 464258 TGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATGGTT 464199
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || || || || || |||||||||||
Sbjct 464198 TTCCCAGTAAGAGTCTTAACGAAAATCTGCAT 464167
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || ||||||||||| |||||||| || |||| |||| | |||
Sbjct 464606 AGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCC 464547
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||||||| || || ||| | || |||| ||| ||||| || | ||||| |||||
Sbjct 464546 TCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 464487
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | |||||| | | | || || | ||| || | |||||| ||
Sbjct 464486 TGAATCTTAGTCTTCACATTCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTC 464427
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||| || || || ||||| ||||||||
Sbjct 464426 TTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 464395
>seq319
Length=213347
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || ||||||||||| || |||||||||||||| | |||| | | ||||| | ||
Sbjct 180516 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGC 180457
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || ||| | || |||| || ||||| || | || || ||||| |||||
Sbjct 180456 TTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGAATTTTG 180397
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
||| || | | | | |||||| | || ||| | |||||| || ||||| ||
Sbjct 180396 GCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATTGTCTTTCCTGTT 180337
Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936
|| ||||||||||| |||||||||
Sbjct 180336 AGGGTTTTGACAAAGATCTGCATT 180313
>seq2834
Length=64598
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/208 (69%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || |||||||||||||| | || | | || || | |||
Sbjct 910 TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 851
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || || | || || || |||||||| || | ||| |||||||| || ||
Sbjct 850 TTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTG 791
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
||| ||||| | | | | ||||| || || ||| | ||| |||||||| || |
Sbjct 790 GCT--TTCACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCG 733
Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938
| || ||||| || || |||||||||||
Sbjct 732 TTAGGGTTTTCACGAAGATCTGCATTTT 705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405032715362020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |