Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq51 96.9 3e-15 seq319 93.3 3e-14 seq2834 82.4 6e-11 >seq51 Length=574565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| ||||||||||| || | ||| || | || ||||| || Sbjct 463685 TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCCAACTGC 463626 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || |||| ||| |||||| || | ||||| || || ||||| Sbjct 463625 TTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATTTTG 463566 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | |||||| | |||| || | ||||||||| || || ||| Sbjct 463565 GTCTTGACATTCTCAATAGTGTCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTC 463506 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| || ||||| Sbjct 463505 AGGGTTTTCACAAAGATTTGCAT 463483 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || || |||||||| |||||||| || |||| || || | ||| Sbjct 464378 AGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCC 464319 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | |||| || ||| ||||| || | |||||| || || Sbjct 464318 TCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCT 464259 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | |||||| | | | | || || | || ||| | |||||||||| Sbjct 464258 TGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATGGTT 464199 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || || ||||||||||| Sbjct 464198 TTCCCAGTAAGAGTCTTAACGAAAATCTGCAT 464167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||||||||| |||||||| || |||| |||| | ||| Sbjct 464606 AGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCC 464547 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| || || ||| | || |||| ||| ||||| || | ||||| ||||| Sbjct 464546 TCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 464487 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | || || | ||| || | |||||| || Sbjct 464486 TGAATCTTAGTCTTCACATTCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTC 464427 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || ||||| |||||||| Sbjct 464426 TTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 464395 >seq319 Length=213347 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | |||| | | ||||| | || Sbjct 180516 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGC 180457 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| || ||||| || | || || ||||| ||||| Sbjct 180456 TTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGAATTTTG 180397 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | || ||| | |||||| || ||||| || Sbjct 180396 GCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATTGTCTTTCCTGTT 180337 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || ||||||||||| ||||||||| Sbjct 180336 AGGGTTTTGACAAAGATCTGCATT 180313 >seq2834 Length=64598 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||| | || | | || || | ||| Sbjct 910 TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 851 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || || |||||||| || | ||| |||||||| || || Sbjct 850 TTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTG 791 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | | ||||| || || ||| | ||| |||||||| || | Sbjct 790 GCT--TTCACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCG 733 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || || ||||||||||| Sbjct 732 TTAGGGTTTTCACGAAGATCTGCATTTT 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405032715362020