Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq20 206 3e-48 seq2 105 7e-18 seq7 91.5 2e-13 seq324 87.8 2e-12 seq206 87.8 2e-12 seq1711 86.0 7e-12 seq150 86.0 7e-12 seq384 84.2 2e-11 seq57 84.2 2e-11 seq5238 82.4 8e-11 seq317 82.4 8e-11 >seq20 Length=765589 Score = 206 bits (228), Expect = 3e-48 Identities = 609/920 (66%), Gaps = 34/920 (4%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||| || || ||||||||| | || ||||||||||| ||||| |||| Sbjct 522475 CATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 522416 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||| ||| | | || | | || || |||| | ||| |||||||| Sbjct 522415 AAGAGAGATCAACTCCATCCAATCGAACGGGTTCTGAACTCCGTAAACCTTTTCACACC- 522357 Query 92908 CAACT-CGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 ||| | | ||| | || || || ||||| || |||||||| ||||| ||||| | Sbjct 522356 CAAGTGCAGCCAACAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCACAGT 522297 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||| || | || || || || || ||||| | ||| ||| ||||||| | || | Sbjct 522296 TCATCCCAACCAGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTG 522237 Query 93027 CTTCTTTCAAGAT----TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACA-TAAT- 93080 | || || | || | | | ||| || | | | || || || ||| Sbjct 522236 CATCCTTTACTATCCCCTGCACCTTCTCAACACTCAGCTTCTTCTT------CAGTAAGC 522183 Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | | ||| ||||| || || | ||||||||||| ||||||| ||| || Sbjct 522182 TGTATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTG 522123 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTA 93199 ||| |||||||| || | | || || || |||||||| || || || ||| ||||| Sbjct 522122 AGAAGGTTAAACCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTT 522064 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTT- 93256 ||||| || || || ||||| || ||||| || | | | || ||||| ||| Sbjct 522063 CCAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACGATTCA 522004 Query 93257 GCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 || || | ||||| | ||||||||| || || ||||||| |||||| | Sbjct 522003 GCACCATCA------ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATA 521950 Query 93317 GTTTCGATAGCGTTAAATAGGTAA-TCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 ||||| || || ||| || | ||| || |||||| ||||| || || | Sbjct 521949 GTTTCAATTGCACGAAAAAGATGGGTCTTAAG-GTTAGAATCTTTGATGTAAGTTTCTAA 521891 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 | ||||| ||||||||||| || | || || || || |||||||| || |||||| Sbjct 521890 AAGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGC 521831 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | |||||| | | ||| || || | ||||| | ||||||| || || || Sbjct 521830 GCGAGCTTCAGCAACCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGAT 521771 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTT 93554 || || ||||| || || || || | || || | || ||||| | || || | | Sbjct 521770 GCCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGT 521711 Query 93555 TAAGCT--TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 |||| | | ||||| | | ||||| |||||||||||||||||| ||||||| || Sbjct 521710 TAAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAA 521651 Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672 || ||||| |||||||||||||| ||||| || | | | |||| |||||| || || || Sbjct 521650 TGAAGCTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACAT-AC 521592 Query 93673 A-AAACGATTAGGGTTATCT 93691 | || | || ||||| ||| Sbjct 521591 AGAATCTATCTGGGTTTTCT 521572 >seq2 Length=1269521 Score = 105 bits (116), Expect = 7e-18 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 885873 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 885814 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAAT 126362 ||||||||||||||||| |||||| || ||||| |||| Sbjct 885813 GTGGGTTCGAACCCCACTTCTGACATTTTTTTATTAGAAT 885774 >seq7 Length=1287983 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 1182565 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 1182506 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| |||||| ||||| Sbjct 1182505 GTGGGTTCAAATCCCACTTCTGACATTTTATT 1182474 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 1182749 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 1182690 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| ||||||| || Sbjct 1182689 GTGGGTTCAAATCCCACTTCTGACAATTT 1182661 >seq324 Length=211473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 26560 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 26619 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 26620 GTGGGTTCAAATCCCACTTCTGACA 26644 >seq206 Length=271066 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 200140 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 200081 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 200080 GTGGGTTCAAATCCCACTTCTGACA 200056 >seq1711 Length=92048 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 36509 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 36568 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| |||||| || ||||| |||||| Sbjct 36569 GTGGGTTCAAATCCCACTTCTGACATTTTTTTATTTTTATTTTT 36612 >seq150 Length=316497 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 203683 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 203624 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 203623 TGGGTTCAAATCCCACTTCTGACA 203600 >seq384 Length=201090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 71155 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 71214 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||| ||| || || Sbjct 71215 GTGGGTTCAAATCCCACTTCTGACATATTTTTTTT 71249 >seq57 Length=515138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | Sbjct 255478 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGG 255419 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||| || ||||| |||||||| Sbjct 255418 CGTGGGTTCAAATCCCACTTCTGACAAA 255391 >seq5238 Length=25593 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 19811 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19868 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 19869 TTCAAATCCCACAGCTGTCAACTTTTT 19895 >seq317 Length=231167 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 204620 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 204561 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 204560 GCGTGGGTTCAAATCCCACTTCTGACA 204534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556782853409520