Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq20 206 3e-48
seq2 105 7e-18
seq7 91.5 2e-13
seq324 87.8 2e-12
seq206 87.8 2e-12
seq1711 86.0 7e-12
seq150 86.0 7e-12
seq384 84.2 2e-11
seq57 84.2 2e-11
seq5238 82.4 8e-11
seq317 82.4 8e-11
>seq20
Length=765589
Score = 206 bits (228), Expect = 3e-48
Identities = 609/920 (66%), Gaps = 34/920 (4%)
Strand=Plus/Minus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
||||||| | ||| || || ||||||||| | || ||||||||||| ||||| ||||
Sbjct 522475 CATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 522416
Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907
| ||| ||| | | || | | || || |||| | ||| ||||||||
Sbjct 522415 AAGAGAGATCAACTCCATCCAATCGAACGGGTTCTGAACTCCGTAAACCTTTTCACACC- 522357
Query 92908 CAACT-CGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966
||| | | ||| | || || || ||||| || |||||||| ||||| ||||| |
Sbjct 522356 CAAGTGCAGCCAACAGCCTGTCTGCAACAAACTCAATGTACTGGCTCATCAGCTCACAGT 522297
Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026
|||| || | || || || || || ||||| | ||| ||| ||||||| | || |
Sbjct 522296 TCATCCCAACCAGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTG 522237
Query 93027 CTTCTTTCAAGAT----TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACA-TAAT- 93080
| || || | || | | | ||| || | | | || || || |||
Sbjct 522236 CATCCTTTACTATCCCCTGCACCTTCTCAACACTCAGCTTCTTCTT------CAGTAAGC 522183
Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140
|||| | | ||| ||||| || || | ||||||||||| ||||||| ||| ||
Sbjct 522182 TGTATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTTG 522123
Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTA 93199
||| |||||||| || | | || || || |||||||| || || || ||| |||||
Sbjct 522122 AGAAGGTTAAACCCGGCATTAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTT 522064
Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTT- 93256
||||| || || || ||||| || ||||| || | | | || ||||| |||
Sbjct 522063 CCAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATCAACCTCTCAGCAAACGATTCA 522004
Query 93257 GCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316
|| || | ||||| | ||||||||| || || ||||||| |||||| |
Sbjct 522003 GCACCATCA------ATCCAACGAAGAGCCCAATCTGCCTTCTTCTTAACACAAGGGATA 521950
Query 93317 GTTTCGATAGCGTTAAATAGGTAA-TCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375
||||| || || ||| || | ||| || |||||| ||||| || || |
Sbjct 521949 GTTTCAATTGCACGAAAAAGATGGGTCTTAAG-GTTAGAATCTTTGATGTAAGTTTCTAA 521891
Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435
| ||||| ||||||||||| || | || || || || |||||||| || ||||||
Sbjct 521890 AAGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGC 521831
Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495
| |||||| | | ||| || || | ||||| | ||||||| || || ||
Sbjct 521830 GCGAGCTTCAGCAACCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGAT 521771
Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTT 93554
|| || ||||| || || || || | || || | || ||||| | || || | |
Sbjct 521770 GCCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGT 521711
Query 93555 TAAGCT--TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612
|||| | | ||||| | | ||||| |||||||||||||||||| ||||||| ||
Sbjct 521710 TAAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAA 521651
Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672
|| ||||| |||||||||||||| ||||| || | | | |||| |||||| || || ||
Sbjct 521650 TGAAGCTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACAT-AC 521592
Query 93673 A-AAACGATTAGGGTTATCT 93691
| || | || ||||| |||
Sbjct 521591 AGAATCTATCTGGGTTTTCT 521572
>seq2
Length=1269521
Score = 105 bits (116), Expect = 7e-18
Identities = 84/100 (84%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 885873 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 885814
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAAT 126362
||||||||||||||||| |||||| || ||||| ||||
Sbjct 885813 GTGGGTTCGAACCCCACTTCTGACATTTTTTTATTAGAAT 885774
>seq7
Length=1287983
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/92 (83%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 1182565 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 1182506
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||| || ||||| |||||| |||||
Sbjct 1182505 GTGGGTTCAAATCCCACTTCTGACATTTTATT 1182474
Score = 82.4 bits (90), Expect = 8e-11
Identities = 72/89 (81%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 1182749 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 1182690
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351
|||||||| || ||||| ||||||| ||
Sbjct 1182689 GTGGGTTCAAATCCCACTTCTGACAATTT 1182661
>seq324
Length=211473
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 26560 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 26619
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 26620 GTGGGTTCAAATCCCACTTCTGACA 26644
>seq206
Length=271066
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 200140 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 200081
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 200080 GTGGGTTCAAATCCCACTTCTGACA 200056
>seq1711
Length=92048
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/104 (79%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 36509 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 36568
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
|||||||| || ||||| |||||| || ||||| ||||||
Sbjct 36569 GTGGGTTCAAATCCCACTTCTGACATTTTTTTATTTTTATTTTT 36612
>seq150
Length=316497
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 203683 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 203624
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| || ||||| ||||||
Sbjct 203623 TGGGTTCAAATCCCACTTCTGACA 203600
>seq384
Length=201090
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/95 (80%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 71155 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 71214
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||| || ||||| |||||| ||| || ||
Sbjct 71215 GTGGGTTCAAATCCCACTTCTGACATATTTTTTTT 71249
>seq57
Length=515138
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321
|||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |
Sbjct 255478 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGG 255419
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349
||||||||| || ||||| ||||||||
Sbjct 255418 CGTGGGTTCAAATCCCACTTCTGACAAA 255391
>seq5238
Length=25593
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 19811 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19868
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| ||| || ||
Sbjct 19869 TTCAAATCCCACAGCTGTCAACTTTTT 19895
>seq317
Length=231167
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320
||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | |
Sbjct 204620 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 204561
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 204560 GCGTGGGTTCAAATCCCACTTCTGACA 204534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556782853409520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |