Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq843 86.0 4e-12 seq51 86.0 4e-12 seq6 82.4 5e-11 >seq843 Length=130910 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| || || | ||||| |||| || |||||||| ||| | ||| ||| | Sbjct 120127 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 120186 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | | || | || || || || ||||| || | || | | Sbjct 120187 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 120246 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | | ||||||||||| |||||| | |||||| || ||| | || |||||| Sbjct 120247 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 120306 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||||||||| || |||||| |||| Sbjct 120307 AACATTCAGAAGGAATCGACGCTTCATCTGGT 120338 >seq51 Length=574565 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || || |||||||| ||| ||||| ||| | | Sbjct 463939 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAAACCATCACCCTGGAAGTTGAAAGCTCT 463998 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | ||||| ||| ||| || || ||||| | || | |||| Sbjct 463999 GACACTATCGATAACGTTAAGACAAAGATTCAGGACAAGGAGGGAATTCCACCAGACCAG 464058 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || || || | || ||| || || |||| ||||||||| Sbjct 464059 CAGAGGCTGATCTTTGCCGGGAAGCAGTTGGATGATGGAAGGACATTGGCTGATTACAAT 464118 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||||| | || |||| | || || | ||||| Sbjct 464119 ATTCAGAAGGAATCTACTTTGCACCTGGTGCTTCGGTTGAGGGGAGG 464165 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||| || | || || |||||||| ||| | ||| ||| | || Sbjct 464167 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 464226 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| || ||| ||||| ||||| | ||||| || Sbjct 464227 GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTG---AC 464283 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||||||||||| || || || || ||| | ||| |||| |||||| Sbjct 464284 CAGCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTAC 464343 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || || |||||||| || || || |||| Sbjct 464344 AACATCCAAAAGGAATCAACCCTGCACTTGGT 464375 >seq6 Length=1196388 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||| || || || ||||| |||| || | | Sbjct 29246 ATGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCC 29187 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| |||||| || || ||||| | || | | || Sbjct 29186 GACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAG 29127 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || || || ||| ||| | || ||||||||| Sbjct 29126 CAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAAT 29067 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || || || ||| | || | || ||| |||| ||| Sbjct 29066 ATCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGGA 29019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358075924694092